Commit 10113ced authored by Ian Longden's avatar Ian Longden
Browse files

removing old test

parent 836acd51
CREATE TABLE `regulatory_factor` (
`regulatory_factor_id` int(11) NOT NULL auto_increment,
`name` varchar(255) NOT NULL default '',
`type` enum('miRNA_target','transcription_factor','transcription_factor_complex') default NULL,
PRIMARY KEY (`regulatory_factor_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
1 hsa-miR-23b miRNA_target
2 hsa-miR-23a miRNA_target
3 hsa-miR-224 miRNA_target
4 hsa-miR-138 miRNA_target
5 hsa-miR-133b miRNA_target
6 hsa-miR-133a miRNA_target
7 gga-miR-133c miRNA_target
8 hsa-miR-200a miRNA_target
9 hsa-miR-27b miRNA_target
10 hsa-miR-139 miRNA_target
11 gga-miR-124b miRNA_target
12 hsa-miR-124a miRNA_target
13 rno-miR-347 miRNA_target
14 hsa-miR-337 miRNA_target
15 hsa-miR-328 miRNA_target
16 hsa-miR-296 miRNA_target
17 hsa-miR-29a miRNA_target
18 hsa-miR-29b miRNA_target
19 hsa-miR-29c miRNA_target
20 hsa-miR-214 miRNA_target
21 hsa-miR-195 miRNA_target
22 hsa-miR-16 miRNA_target
23 hsa-miR-146 miRNA_target
24 hsa-miR-107 miRNA_target
25 hsa-miR-103 miRNA_target
26 rno-miR-343 miRNA_target
27 hsa-miR-326 miRNA_target
28 hsa-miR-145 miRNA_target
29 hsa-miR-27a miRNA_target
30 hsa-miR-152 miRNA_target
31 hsa-miR-148b miRNA_target
32 hsa-miR-148a miRNA_target
33 hsa-miR-144 miRNA_target
34 hsa-miR-130a miRNA_target
35 trans_fac1 transcription_factor
36 trans_fac2 transcription_factor
CREATE TABLE `regulatory_factor_coding` (
`regulatory_factor_id` int(11) NOT NULL default '0',
`transcript_id` int(11) default NULL,
`gene_id` int(11) default NULL,
KEY `transcript_idx` (`transcript_id`),
KEY `gene_idx` (`gene_id`),
KEY `regulatory_factor_idx` (`regulatory_factor_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
1 21716 \N
2 21717 \N
3 21720 \N
4 \N 18265
5 \N 18271
6 \N 18275
CREATE TABLE `regulatory_feature` (
`regulatory_feature_id` int(11) NOT NULL auto_increment,
`name` varchar(255) NOT NULL default '',
`seq_region_id` int(11) NOT NULL default '0',
`seq_region_start` int(11) NOT NULL default '0',
`seq_region_end` int(11) NOT NULL default '0',
`seq_region_strand` tinyint(4) NOT NULL default '0',
`analysis_id` int(11) NOT NULL default '0',
`regulatory_factor_id` int(11) default NULL,
PRIMARY KEY (`regulatory_feature_id`),
KEY `seq_region_idx` (`seq_region_id`,`analysis_id`,`seq_region_start`),
KEY `seq_region_idx_2` (`seq_region_id`,`seq_region_start`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
1 ENST00000310998:hsa-miR-23b 469271 919788 919807 1 1500 1
2 ENST00000310998:hsa-miR-23a 469271 919787 919807 1 1500 2
3 ENST00000310998:hsa-miR-224 469271 919793 919810 1 1500 3
4 ENST00000310998:hsa-miR-138 469271 920016 920035 1 1500 4
5 ENST00000310998:hsa-miR-133b 469271 919688 919703 1 1500 5
6 ENST00000310998:hsa-miR-133a 469271 919682 919703 1 1500 6
7 ENST00000310998:gga-miR-133c 469271 919682 919703 1 1500 7
8 ENST00000310998:hsa-miR-200a 469271 919775 919790 -1 1500 8
9 ENST00000278995:hsa-miR-27b 469271 940934 940953 1 1500 9
10 ENST00000278995:hsa-miR-139 469271 940935 940953 1 1500 10
11 ENST00000278995:gga-miR-124b 469271 940656 940681 1 1500 11
12 ENST00000278995:hsa-miR-124a 469271 940656 940681 1 1500 12
13 ENST00000217299:rno-miR-347 469271 950917 950934 1 1500 13
14 ENST00000217299:hsa-miR-337 469271 951609 951631 1 1500 14
15 ENST00000217299:hsa-miR-328 469271 950399 950425 1 1500 15
16 ENST00000217299:hsa-miR-328 469271 950377 950395 1 1500 15
17 ENST00000217299:hsa-miR-296 469271 950915 950936 1 1500 16
18 ENST00000217299:hsa-miR-29a 469271 950657 950677 1 1500 17
19 ENST00000217299:hsa-miR-29b 469271 950655 950677 1 1500 18
20 ENST00000217299:hsa-miR-29c 469271 950658 950677 1 1500 19
21 ENST00000217299:hsa-miR-214 469271 951165 951183 1 1500 20
22 ENST00000217299:hsa-miR-195 469271 951167 951185 1 1500 21
23 ENST00000217299:hsa-miR-16 469271 951167 951185 1 1500 22
24 ENST00000217299:hsa-miR-146 469271 950025 950047 1 1500 23
25 ENST00000217299:hsa-miR-107 469271 950657 950678 1 1500 24
26 ENST00000217299:hsa-miR-103 469271 950658 950678 1 1500 25
27 ENST00000300415:rno-miR-343 469271 973998 974017 -1 1500 26
28 ENST00000300415:hsa-miR-326 469271 974392 974410 -1 1500 27
29 ENST00000300415:hsa-miR-145 469271 973967 973995 -1 1500 28
30 ENST00000262651:rno-miR-347 469271 1030431 1030449 1 1500 13
31 ENST00000262651:rno-miR-347 469271 1030366 1030385 1 1500 13
32 ENST00000262651:hsa-miR-296 469271 1030633 1030660 1 1500 16
33 ENST00000262651:hsa-miR-27a 469271 1030746 1030762 1 1500 29
34 ENST00000262651:hsa-miR-27b 469271 1030746 1030762 1 1500 9
35 ENST00000262651:hsa-miR-224 469271 1030746 1030765 1 1500 3
36 ENST00000262651:hsa-miR-152 469271 1030514 1030543 1 1500 30
37 ENST00000262651:hsa-miR-148b 469271 1030516 1030543 1 1500 31
38 ENST00000262651:hsa-miR-148a 469271 1030516 1030543 1 1500 32
39 ENST00000262651:hsa-miR-144 469271 1030743 1030761 1 1500 33
40 ENST00000262651:hsa-miR-138 469271 1031432 1031447 1 1500 4
41 ENST00000262651:hsa-miR-138 469271 1030809 1030823 1 1500 4
42 ENST00000262651:hsa-miR-130a 469271 1030527 1030543 1 1500 34
43 ENST00000262651:hsa-miR-130b 469271 1030527 1030543 1 1500 35
44 ENST00000262651:hsa-let-7i 469271 1031090 1031111 1 1500 36
CREATE TABLE `regulatory_feature_object` (
`regulatory_feature_id` int(11) NOT NULL default '0',
`ensembl_object_type` enum('Transcript','Translation','Gene') NOT NULL default 'Transcript',
`ensembl_object_id` int(11) NOT NULL default '0',
`influence` enum('positive','negative','mixed','unknown') default NULL,
`evidence` varchar(255) default NULL,
KEY `regulatory_feature_idx` (`regulatory_feature_id`),
KEY `ensembl_object_idx` (`ensembl_object_type`,`ensembl_object_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
1 Transcript 21716 negative
2 Transcript 21716 negative
3 Transcript 21716 negative
4 Transcript 21716 negative
5 Transcript 21716 negative
6 Transcript 21716 negative
7 Transcript 21716 negative
8 Transcript 21716 negative
9 Transcript 21717 negative
10 Transcript 21717 negative
11 Transcript 21717 negative
12 Transcript 21717 negative
13 Transcript 21720 negative
14 Transcript 21720 negative
15 Transcript 21720 negative
16 Transcript 21720 negative
17 Transcript 21720 negative
18 Transcript 21720 negative
19 Transcript 21720 negative
20 Transcript 21720 negative
21 Transcript 21720 negative
22 Transcript 21720 negative
23 Transcript 21720 negative
24 Transcript 21720 negative
25 Transcript 21720 negative
26 Transcript 21720 negative
27 Transcript 21721 negative
28 Transcript 21721 negative
29 Transcript 21721 negative
30 Transcript 21723 negative
31 Transcript 21723 negative
32 Transcript 21723 negative
33 Transcript 21723 negative
34 Transcript 21723 negative
35 Transcript 21723 negative
36 Transcript 21723 negative
37 Transcript 21723 negative
38 Transcript 21723 negative
39 Transcript 21723 negative
40 Transcript 21723 negative
41 Transcript 21723 negative
42 Transcript 21723 negative
43 Transcript 21723 negative
44 Transcript 21723 negative
40 Gene 18257 positive \N
41 Gene 18258 positive \N
42 Gene 18259 positive \N
CREATE TABLE `regulatory_search_region` (
`regulatory_search_region_id` int(11) NOT NULL auto_increment,
`name` varchar(255) NOT NULL default '',
`seq_region_id` int(11) NOT NULL default '0',
`seq_region_start` int(11) NOT NULL default '0',
`seq_region_end` int(11) NOT NULL default '0',
`seq_region_strand` tinyint(4) NOT NULL default '0',
`ensembl_object_type` enum('Transcript','Translation','Gene') NOT NULL default 'Transcript',
`ensembl_object_id` int(11) default NULL,
`analysis_id` int(11) NOT NULL default '0',
PRIMARY KEY (`regulatory_search_region_id`),
KEY `rsr_idx` (`regulatory_search_region_id`),
KEY `ensembl_object_idx` (`ensembl_object_type`,`ensembl_object_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `seq_region_idx_2` (`seq_region_id`,`seq_region_start`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
1 CisRed_Search_2 469293 99697840 99699489 -1 Gene 18256 5011
2 CisRed_Search_11 469293 99639860 99646074 1 Gene 18256 5011
3 CisRed_Search_18 469293 166594596 166599297 -1 Gene 18257 5011
4 CisRed_Search_27 469293 166493136 166495988 1 Gene 18258 5011
5 CisRed_Search_34 469293 193348613 193352931 1 Gene 18256 5011
6 CisRed_Search_39 469293 53517691 53519509 -1 Gene 18257 5011
7 CisRed_Search_49 469293 41147153 41148821 1 Gene 18257 5011
8 CisRed_Search_56 469293 46204112 46205970 1 Gene 18258 5011
9 CisRed_Search_62 469293 116712317 116714167 1 Gene 18258 5011
10 CisRed_Search_81 469293 91519966 91521943 -1 Gene 18258 5011
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