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ensembl-gh-mirror
ensembl
Commits
11799765
Commit
11799765
authored
14 years ago
by
Ian Longden
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add flag for description set and add new status of MULTI_DELETE to object_xref
parent
ef4b13f7
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misc-scripts/xref_mapping/sql/table.sql
+4
-1
4 additions, 1 deletion
misc-scripts/xref_mapping/sql/table.sql
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4 additions
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1 deletion
misc-scripts/xref_mapping/sql/table.sql
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11799765
...
...
@@ -295,6 +295,8 @@ CREATE TABLE gene_stable_id (
internal_id
INT
UNSIGNED
NOT
NULL
,
stable_id
VARCHAR
(
128
)
NOT
NULL
,
display_xref_id
INT
UNSIGNED
DEFAULT
NULL
,
desc_set
INT
UNSIGNED
DEFAULT
0
,
PRIMARY
KEY
(
stable_id
),
INDEX
internal_idx
(
internal_id
)
...
...
@@ -305,6 +307,7 @@ CREATE TABLE transcript_stable_id (
internal_id
INT
UNSIGNED
NOT
NULL
,
stable_id
VARCHAR
(
128
)
NOT
NULL
,
display_xref_id
INT
UNSIGNED
DEFAULT
NULL
,
PRIMARY
KEY
(
stable_id
),
INDEX
internal_idx
(
internal_id
)
...
...
@@ -337,7 +340,7 @@ CREATE TABLE object_xref (
'DIRECT'
,
'SEQUENCE_MATCH'
,
'INFERRED_PAIR'
,
'PROBE'
,
'UNMAPPED'
,
'COORDINATE_OVERLAP'
),
ox_status
ENUM
(
'DUMP_OUT'
,
'FAILED_PRIORITY'
,
'FAILED_CUTOFF'
,
'NO_DISPLAY'
)
NOT
NULL
DEFAULT
'DUMP_OUT'
,
ox_status
ENUM
(
'DUMP_OUT'
,
'FAILED_PRIORITY'
,
'FAILED_CUTOFF'
,
'NO_DISPLAY'
,
'MULTI_DELETE'
)
NOT
NULL
DEFAULT
'DUMP_OUT'
,
-- set ox_status to 0 if non used priority_xref or failed cutoff
unused_priority
INT
UNSIGNED
,
master_xref_id
INT
UNSIGNED
DEFAULT
NULL
,
...
...
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