ENSCORESW-480: updates to _objs_from_sth methods across modules
all modules take the same arguments and have the same behaviour the only differences should be related to the columns specific to a given feature
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- modules/Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm 134 additions, 87 deletionsmodules/Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm 143 additions, 185 deletionsmodules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm 73 additions, 133 deletionsmodules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm 191 additions, 205 deletionsmodules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/IntronSupportingEvidenceAdaptor.pm 147 additions, 76 deletionsmodules/Bio/EnsEMBL/DBSQL/IntronSupportingEvidenceAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm 119 additions, 157 deletionsmodules/Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/OperonAdaptor.pm 202 additions, 161 deletionsmodules/Bio/EnsEMBL/DBSQL/OperonAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/OperonTranscriptAdaptor.pm 202 additions, 163 deletionsmodules/Bio/EnsEMBL/DBSQL/OperonTranscriptAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm 120 additions, 91 deletionsmodules/Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm 125 additions, 168 deletionsmodules/Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm 138 additions, 169 deletionsmodules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm 117 additions, 68 deletionsmodules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm 114 additions, 154 deletionsmodules/Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm 125 additions, 87 deletionsmodules/Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm 127 additions, 169 deletionsmodules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
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