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ensembl-gh-mirror
ensembl
Commits
126b7ca5
Unverified
Commit
126b7ca5
authored
5 years ago
by
ens-bwalts
Committed by
GitHub
5 years ago
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Merge pull request #471 from Ensembl/feature/vgnc_xrefs_new_species
Enable VGNC xrefs for 15 more species
parents
adfe2126
3eb69e91
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misc-scripts/xref_mapping/xref_config.ini
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View file @
126b7ca5
...
@@ -547,6 +547,141 @@ priority = 1
...
@@ -547,6 +547,141 @@ priority = 1
parser
=
VGNCParser
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::sus_scrofa]
# Used by sus_scrofa
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::aotus_nancymaae]
# Used by aotus_nancymaae
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::carlito_syrichta]
# Used by carlito_syrichta
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::cercocebus_atys]
# Used by cercocebus_atys
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::chlorocebus_sabaeus]
# Used by chlorocebus_sabaeus
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::macaca_fascicularis]
# Used by macaca_fascicularis
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::macaca_nemestrina]
# Used by macaca_nemestrina
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::mandrillus_leucophaeus]
# Used by mandrillus_leucophaeus
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::nomascus_leucogenys]
# Used by nomascus_leucogenys
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::otolemur_garnettii]
# Used by otolemur_garnettii
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::pan_paniscus]
# Used by pan_paniscus
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::propithecus_coquereli]
# Used by propithecus_coquereli
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::rhinopithecus_bieti]
# Used by rhinopithecus_bieti
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::cebus_capucinus]
# Used by cebus_capucinus
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source VGNC::saimiri_boliviensis_boliviensis]
# Used by saimiri_boliviensis_boliviensis
name
=
VGNC
download
=
Y
order
=
29
priority
=
1
parser
=
VGNCParser
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/genenames/vgnc/tsv/vgnc_gene_set_All.txt.gz
[source HGNC::homo_sapiens#01]
[source HGNC::homo_sapiens#01]
# Used by homo_sapiens
# Used by homo_sapiens
name
=
HGNC
name
=
HGNC
...
@@ -1956,6 +2091,66 @@ source = VGNC::microcebus_murinus
...
@@ -1956,6 +2091,66 @@ source = VGNC::microcebus_murinus
taxonomy_id
=
9555
taxonomy_id
=
9555
source
=
VGNC::papio_anubis
source
=
VGNC::papio_anubis
[species sus_scrofa]
taxonomy_id
=
9823
source
=
VGNC::sus_scrofa
[species aotus_nancymaae]
taxonomy_id
=
37293
source
=
VGNC::aotus_nancymaae
[species carlito_syrichta]
taxonomy_id
=
1868482
source
=
VGNC::carlito_syrichta
[species cercocebus_atys]
taxonomy_id
=
9531
source
=
VGNC::cercocebus_atys
[species chlorocebus_sabaeus]
taxonomy_id
=
60711
source
=
VGNC::chlorocebus_sabaeus
[species macaca_fascicularis]
taxonomy_id
=
9541
source
=
VGNC::macaca_fascicularis
[species macaca_nemestrina]
taxonomy_id
=
9545
source
=
VGNC::macaca_nemestrina
[species mandrillus_leucophaeus]
taxonomy_id
=
9568
source
=
VGNC::mandrillus_leucophaeus
[species nomascus_leucogenys]
taxonomy_id
=
61853
source
=
VGNC::nomascus_leucogenys
[species otolemur_garnettii]
taxonomy_id
=
30611
source
=
VGNC::otolemur_garnettii
[species pan_paniscus]
taxonomy_id
=
9597
source
=
VGNC::pan_paniscus
[species propithecus_coquereli]
taxonomy_id
=
379532
source
=
VGNC::propithecus_coquereli
[species rhinopithecus_bieti]
taxonomy_id
=
61621
source
=
VGNC::rhinopithecus_bieti
[species cebus_capucinus]
taxonomy_id
=
1737458
source
=
VGNC::cebus_capucinus
[species saimiri_boliviensis_boliviensis]
taxonomy_id
=
39432
source
=
VGNC::saimiri_boliviensis_boliviensis
[species ciona_intestinalis]
[species ciona_intestinalis]
taxonomy_id
=
7719
taxonomy_id
=
7719
source
=
cint_aniseed_v1::ciona_intestinalis
source
=
cint_aniseed_v1::ciona_intestinalis
...
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