Commit 1786e04e authored by Magali Ruffier's avatar Magali Ruffier
Browse files

missing run_all and max_run options

parent f4ce1d99
......@@ -21,7 +21,11 @@ sub default_options {
release => software_version(),
run_all => 0,
bin_count => '150',
max_run => '100',
### Defaults
......@@ -50,6 +54,8 @@ sub pipeline_analyses {
-module => 'Bio::EnsEMBL::Pipeline::Production::ClassSpeciesFactory',
-parameters => {
species => $self->o('species'),
run_all => $self->o('run_all'),
max_run => $self->o('max_run')
},
-input_ids => [ {} ],
-flow_into => {
......@@ -72,7 +78,7 @@ sub pipeline_analyses {
-module => 'Bio::EnsEMBL::Pipeline::Production::SnpDensity',
-parameters => {
table => 'gene', logic_name => 'snpdensity', value_type => 'sum',
bin_count => $self->o('bin_count'),
bin_count => $self->o('bin_count'), max_run => $self->o('max_run'),
},
-max_retry_count => 1,
-hive_capacity => 10,
......
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