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Unverified Commit 196f4513 authored by Kieron Taylor's avatar Kieron Taylor Committed by GitHub
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Merge pull request #294 from Ensembl/bugfix/reactome_species

ENSCORESW-2853: match Ensembl species names with underscores
parents 05b5a87d ffacd1b1
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2 merge requests!342Feature/schema update 96,!342Feature/schema update 96
......@@ -115,7 +115,7 @@ sub run {
my ($ensembl_stable_id, $reactome_id, $url, $description, $evidence, $species) = split /\t+/,$line;
if ($description!~ /^[A-Za-z0-9_,\(\)\/\-\.:\+'&;"\/\?%>\s\[\]]+$/) { next; }
$species =~ s/\s//;
$species =~ s/\s/_/;
$species = lc($species);
if ( $alias2species_id{$species} ){
$parsed_count++;
......
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