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Commit 19959a42 authored by Simon White's avatar Simon White
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descriptions for zebrafish RNAseq gene models

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370 Gorilla_RNA-Seq Illumina paired-end reads from Western lowland gorilla generated at the Wellcome Trust Sanger Institute (WTSI) aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Gorilla_RNA-Seq 1 {'label_key' => '[text_label] [display_label]','label' => '[text_label] [display_label]'}
371 human_cdna2genome Homo Sapiens cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate cdna2genome model</a>. Human RefSeq/EMBL cdna2genome 0
372 panda_protein Aileleuca melanoleuca proteins from <a rel="external" href="http://uniprot.org">UniProtKB</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Panda protein 1
373 zfish_RNASeq Gene models built using only <a href="/info/docs/genebuild/zebrafish_rnaseq_annotation.html" class="cp-external">Zebrafish RNASeq</a> data. RNASeq gene 1 {'colour_key' => '[logic_name]','label_key' => 'RNASeq [biotype]','zmenu' => 'RNASeq', 'multi_caption' => 'RNASeq genes'}
374 zfish_3dpf RNASeq read support for exon from from 3 days post fertilization embryos 3dpf exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
375 zfish_2dpf RNASeq read support for exon from from 2 days post fertilization embryos 2dpf exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
376 zfish_male_head RNASeq read support for exon from from male head Male head exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
377 zfish_5dpf RNASeq read support for exon from from 5 days post fertilization embryos 5dpf exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
378 zfish_male_body RNASeq read support for exon from from male body Male body exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
379 zfish_female_body RNASeq read support for exon from from female body Female body exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
380 zfish_ovary RNASeq read support for exon from from ovary Ovary exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
381 zfish_female_head RNASeq read support for exon from from female head Female head exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
382 zfish_1dpf RNASeq read support for exon from from 1 day post fertilization embryos 1dpf exon 1 {'colour_key' => 'exon_support','type' => 'support','zmenu' => 'Supporting_alignment'}
383 zfish_2dpf_intron Spliced RNASeq read support for intron from 2 days post fertilization embryos 2dpf intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
384 zfish_3dpf_intron Spliced RNASeq read support for intron from 3 days post fertilization embryos 3dpf intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
385 zfish_male_head_intron Spliced RNASeq read support for intron from male head Male head intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
386 zfish_5dpf_intron Spliced RNASeq read support for intron from 5 days post fertilization embryos 5dpf intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
387 zfish_male_body_intron Spliced RNASeq read support for intron from male body Male body intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
388 zfish_female_body_intron Spliced RNASeq read support for intron from female body Female body intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
389 zfish_ovary_intron Spliced RNASeq read support for intron from ovary Ovary intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
390 zfish_female_head_intron Spliced RNASeq read support for intron from female head Female head intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
391 zfish_1dpf_intron Spliced RNASeq read support for intron from 1 day post fertilization embryos 1dpf intron 1 {'colour_key' => 'intron_support','type' => 'support','zmenu' => 'Supporting_alignment'}
#add new entries for core databases above, the following are for functional genomics
#500 Nessie Hidden Markov Model based predictions based on tiling array data Nessie (TilingHMM) 1
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