Commit 1bfa4b68 authored by Monika Komorowska's avatar Monika Komorowska
Browse files

no longer loading ArrayExpress xrefs, this is done in parsing using data directly from the core db

parent 2d711c28
......@@ -6,8 +6,6 @@ use vars '@ISA';
@ISA = qw{ XrefMapper::BasicMapper };
use XrefMapper::BasicMapper;
use XrefParser::ArrayExpressParser;
use XrefParser::Database;
use Cwd;
use DBI;
......@@ -45,21 +43,6 @@ IIX
sub process {
my $self = shift;
#check if ArrayExpress xrefs are available for this species
my $xref_parser_db = XrefParser::Database->new( {host => $self->xref()->dbc()->host,
port => $self->xref()->dbc()->port,
user => $self->user,
dbname => $self->xref()->dbc()->dbname,
pass => $self->pass });
my $array_xrefs_parser = XrefParser::ArrayExpressParser->new($xref_parser_db,$self->verbose());
$array_xrefs_parser->create_xrefs($self->verbose());
$array_xrefs_parser = undef;
$xref_parser_db = undef;
# Now process the direct xrefs and add data to the object xrefs remember dependent xrefs.
my $object_xref_id;
......
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