Release 90 version changes

misc-scripts/ontology/sql/patch_88_89_a.sql

@@ -18,7 +18,7 @@
 # Title: Update schema version.
 #
 # Description:
-#   Update schema_version in meta table to 88.
+#   Update schema_version in meta table to 89.
 
 UPDATE meta SET meta_value='89' WHERE meta_key='schema_version';
 

misc-scripts/ontology/sql/patch_89_90_a.sql

+-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
+-- Copyright [2016-2017] EMBL-European Bioinformatics Institute
+--
+-- Licensed under the Apache License, Version 2.0 (the "License");
+-- you may not use this file except in compliance with the License.
+-- You may obtain a copy of the License at
+--
+--      http://www.apache.org/licenses/LICENSE-2.0
+--
+-- Unless required by applicable law or agreed to in writing, software
+-- distributed under the License is distributed on an "AS IS" BASIS,
+-- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+-- See the License for the specific language governing permissions and
+-- limitations under the License.
+
+# patch_89_90_a.sql
+#
+# Title: Update schema version.
+#
+# Description:
+#   Update schema_version in meta table to 90.
+
+UPDATE meta SET meta_value='90' WHERE meta_key='schema_version';
+
+# Patch identifier
+INSERT INTO meta (species_id, meta_key, meta_value)
+  VALUES (NULL, 'patch', 'patch_89_90_a.sql|schema_version');

misc-scripts/ontology/sql/tables.sql

@@ -31,11 +31,11 @@ CREATE TABLE meta (
 # Add schema type and schema version to the meta table
 INSERT INTO meta (meta_key, meta_value) VALUES 
   ('schema_type', 'ontology'),
-  ('schema_version', '89');
+  ('schema_version', '90');
 
 # Patches included in this schema file
 INSERT INTO meta (meta_key, meta_value)
-  VALUES ('patch', 'patch_88_89_a.sql|schema_version');
+  VALUES ('patch', 'patch_89_90_a.sql|schema_version');
 
 
 CREATE TABLE ontology (

modules/Bio/EnsEMBL/ApiVersion.pm

@@ -56,7 +56,7 @@ use base qw( Exporter );
 
 our @EXPORT = qw( software_version );
 
-my $API_VERSION = 89;
+my $API_VERSION = 90;
 
 sub software_version { return $API_VERSION }
 

sql/patch_89_90_a.sql

+-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
+-- Copyright [2016-2017] EMBL-European Bioinformatics Institute
+--
+-- Licensed under the Apache License, Version 2.0 (the "License");
+-- you may not use this file except in compliance with the License.
+-- You may obtain a copy of the License at
+--
+--      http://www.apache.org/licenses/LICENSE-2.0
+--
+-- Unless required by applicable law or agreed to in writing, software
+-- distributed under the License is distributed on an "AS IS" BASIS,
+-- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+-- See the License for the specific language governing permissions and
+-- limitations under the License.
+
+# patch_89_90_a.sql
+#
+# Title: Update schema version.
+#
+# Description:
+#   Update schema_version in meta table to 90.
+
+UPDATE meta SET meta_value='90' WHERE meta_key='schema_version';
+
+# Patch identifier
+INSERT INTO meta (species_id, meta_key, meta_value)
+  VALUES (NULL, 'patch', 'patch_89_90_a.sql|schema_version');

sql/table.sql

@@ -302,13 +302,13 @@ CREATE TABLE IF NOT EXISTS meta (
 # Add schema type and schema version to the meta table.
 INSERT INTO meta (species_id, meta_key, meta_value) VALUES
   (NULL, 'schema_type',     'core'),
-  (NULL, 'schema_version',  '89');
+  (NULL, 'schema_version',  '90');
 
 # Patches included in this schema file:
 # NOTE: At start of release cycle, remove patch entries from last release.
 # NOTE: Avoid line-breaks in values.
 INSERT INTO meta (species_id, meta_key, meta_value)
-  VALUES (NULL, 'patch', 'patch_88_89_a.sql|schema_version');
+  VALUES (NULL, 'patch', 'patch_89_90_a.sql|schema_version');
 
 /**
 @table meta_coord