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Commit 1cf224f2 authored by Marek Szuba's avatar Marek Szuba
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Patch test databases to schema version 95

parent 19f740cc
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Showing with 30 additions and 20 deletions
modules/t/test-genome-DBs/circ/core/meta.txt
View file @ 1cf224f2
......@@ -39,7 +39,7 @@
95 \N patch patch_83_84_c.sql|protein_feature_unique
96 \N patch patch_83_84_d.sql|longer_synonym
1 \N schema_type core
2 \N schema_version 94
2 \N schema_version 95
8 1 assembly.accession GCA_000292705.1
10 1 assembly.date 2012-08
7 1 assembly.default GCA_000292705.1
......@@ -122,3 +122,4 @@
122 \N patch patch_93_94_a.sql|schema_version
123 \N patch patch_93_94_b.sql|nullable_ox_analysis
124 \N patch patch_93_94_c.sql|default_aln_type
125 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/circ/core/table.sql
View file @ 1cf224f2
......@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=125 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=126 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
View file @ 1cf224f2
1 \N schema_version 94
1 \N schema_version 95
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
......@@ -101,3 +101,4 @@
168 \N patch patch_93_94_a.sql|schema_version
169 \N patch patch_93_94_b.sql|nullable_ox_analysis
170 \N patch patch_93_94_c.sql|default_aln_type
171 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/homo_sapiens/core/table.sql
View file @ 1cf224f2
......@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=171 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=172 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/homo_sapiens/empty/meta.txt
View file @ 1cf224f2
1 \N schema_version 94
1 \N schema_version 95
2 1 assembly.default NCBI34
33 1 species.classification Chordata
32 1 species.classification Vertebrata
......@@ -101,3 +101,4 @@
150 \N patch patch_93_94_a.sql|schema_version
151 \N patch patch_93_94_b.sql|nullable_ox_analysis
152 \N patch patch_93_94_c.sql|default_aln_type
153 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/homo_sapiens/empty/table.sql
View file @ 1cf224f2
......@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=153 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=154 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/homo_sapiens/patch/meta.txt
View file @ 1cf224f2
1 \N schema_version 94
1 \N schema_version 95
2014 1 species.classification Haplorrhini
40 1 assembly.default GRCh37
41 1 assembly.date 2009-02
......@@ -106,3 +106,4 @@
2113 \N patch patch_93_94_a.sql|schema_version
2114 \N patch patch_93_94_b.sql|nullable_ox_analysis
2115 \N patch patch_93_94_c.sql|default_aln_type
2116 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/homo_sapiens/patch/table.sql
View file @ 1cf224f2
......@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=2116 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=2117 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/mapping/core/meta.txt
View file @ 1cf224f2
1 \N schema_version 94
1 \N schema_version 95
2 1 assembly.default MULTIMAP
3 1 species.taxonomy_id 1
4 1 assembly.mapping chromosome:MULTIMAP#contig
......@@ -62,3 +62,4 @@
155 \N patch patch_93_94_a.sql|schema_version
156 \N patch patch_93_94_b.sql|nullable_ox_analysis
157 \N patch patch_93_94_c.sql|default_aln_type
158 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/mapping/core/table.sql
View file @ 1cf224f2
......@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=158 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=159 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/mus_musculus/core/meta.txt
View file @ 1cf224f2
1 \N schema_type core
2 \N schema_version 94
2 \N schema_version 95
3 \N patch patch_65_66_a.sql|schema_version
4 \N patch patch_65_66_b.sql|fix_external_db_id
5 \N patch patch_65_66_c.sql|reorder_unmapped_obj_index
......@@ -179,3 +179,4 @@
1691 \N patch patch_93_94_a.sql|schema_version
1692 \N patch patch_93_94_b.sql|nullable_ox_analysis
1693 \N patch patch_93_94_c.sql|default_aln_type
1694 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/mus_musculus/core/table.sql
View file @ 1cf224f2
......@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=1694 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=1695 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/nameless/core/meta.txt
View file @ 1cf224f2
1 \N schema_version 94
1 \N schema_version 95
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
......@@ -100,3 +100,4 @@
154 \N patch patch_93_94_a.sql|schema_version
155 \N patch patch_93_94_b.sql|nullable_ox_analysis
156 \N patch patch_93_94_c.sql|default_aln_type
157 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/nameless/core/table.sql
View file @ 1cf224f2
......@@ -479,7 +479,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=157 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=158 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/ontology/ontology/meta.txt
View file @ 1cf224f2
......@@ -9,7 +9,7 @@
10 patch patch_72_73_b.sql|meta \N
12 patch patch_73_74_a.sql|schema_version \N
14 patch patch_74_75_a.sql|schema_version \N
15 schema_version 94 \N
15 schema_version 95 \N
16 patch patch_75_76_a.sql|schema_version \N
17 patch patch_76_77_a.sql|schema_version \N
18 patch patch_77_78_a.sql|schema_version \N
......@@ -36,3 +36,4 @@
39 patch patch_91_92_a.sql|schema_version \N
40 patch patch_92_93_a.sql|schema_version \N
41 patch patch_93_94_a.sql|schema_version \N
42 patch patch_94_95_a.sql|schema_version \N
modules/t/test-genome-DBs/ontology/ontology/table.sql
View file @ 1cf224f2
......@@ -139,7 +139,7 @@ CREATE TABLE `meta` (
`species_id` int(1) unsigned DEFAULT NULL,
PRIMARY KEY (`meta_id`),
UNIQUE KEY `key_value_idx` (`meta_key`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=42 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=43 DEFAULT CHARSET=latin1;
CREATE TABLE `ontology` (
`ontology_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......
modules/t/test-genome-DBs/polyploidy/core/meta.txt
View file @ 1cf224f2
1 \N schema_type core
2 \N schema_version 94
2 \N schema_version 95
3 \N patch patch_68_69_a.sql|schema_version
4 1 species.taxonomy_id 4565
6 1 species.alias bread wheat
......@@ -155,3 +155,4 @@
235 \N patch patch_93_94_a.sql|schema_version
236 \N patch patch_93_94_b.sql|nullable_ox_analysis
237 \N patch patch_93_94_c.sql|default_aln_type
238 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/polyploidy/core/table.sql
View file @ 1cf224f2
......@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=238 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=239 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/test_collection/core/meta.txt
View file @ 1cf224f2
......@@ -39,7 +39,7 @@
190 \N patch patch_83_84_c.sql|protein_feature_unique
191 \N patch patch_83_84_d.sql|longer_synonym
1 \N schema_type core
2 \N schema_version 94
2 \N schema_version 95
8 1 assembly.accession GCA_000292705.1
10 1 assembly.date 2012-08
7 1 assembly.default GCA_000292705.1
......@@ -175,3 +175,4 @@
217 \N patch patch_93_94_a.sql|schema_version
218 \N patch patch_93_94_b.sql|nullable_ox_analysis
219 \N patch patch_93_94_c.sql|default_aln_type
220 \N patch patch_94_95_a.sql|schema_version
modules/t/test-genome-DBs/test_collection/core/table.sql
View file @ 1cf224f2
......@@ -479,7 +479,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=220 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=221 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
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