Commit 1d730ce1 authored by Andy Yates's avatar Andy Yates
Browse files

Fixed SequenceAdaptor::new() args and FileFaidx POD header.

Following on from Alessandro's comments from the pull request.
SequenceAdaptor can now control the cache size and FileFaidx's POD is
now correct.
parent 4f8c3713
......@@ -69,7 +69,7 @@ our @EXPORT = (@{$DBI::EXPORT_TAGS{'sql_types'}});
sub new {
my ($caller, $db, $chunk_power, $cache_size) = shift;
my ($caller, $db, $chunk_power, $cache_size) = @_;
my $class = ref($caller) || $caller;
my $self = $class->SUPER::new(@_);
$self->_init_seq_instance($chunk_power, $cache_size);
......@@ -117,7 +117,7 @@ sub file {
return $self->{'file'};
=head2 store
=head2 write_index_to_disk
Arg [1] : Boolean; $write_index_to_disk. Controls if we write the index back to disk
Description : Controls if we can write back to disk. Only run to generate the indexes
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