regulatory_feature_transcript->regulatory_feature_coding

misc-scripts/regulatory_regions/RegulatoryFeatureParser/BaseParser.pm

@@ -19,8 +19,8 @@ sub delete_existing {
 
   print "Deleting existing features & related data for type $type\n";
 
-  # Delete any regulatory_factor_transcript entries first
-  my $sth = $db_adaptor->dbc->prepare("DELETE rft FROM regulatory_feature rfeat, regulatory_factor_transcript rft, analysis a WHERE rfeat.regulatory_factor_id=rft.regulatory_factor_id AND a.analysis_id=rfeat.analysis_id AND LOWER(a.analysis_id)=?");
+  # Delete any regulatory_feature_coding entries first
+  my $sth = $db_adaptor->dbc->prepare("DELETE rft FROM regulatory_feature rfeat, regulatory_factor_coding rft, analysis a WHERE rfeat.regulatory_factor_id=rft.regulatory_factor_id AND a.analysis_id=rfeat.analysis_id AND LOWER(a.analysis_id)=?");
   $sth->execute($t);
 
   # now delete interlinked regulatory_feature, regulatory_factor and regulatory_feature_object entries

misc-scripts/regulatory_regions/RegulatoryFeatureParser/cisred.pm

@@ -44,7 +44,7 @@ sub parse {
   my %feature_objects;
   my %anal;
 
-  # TODO - regulatory_factor_transcripts
+  # TODO - regulatory_factor_coding
 
   my $stable_id_to_internal_id = $self->build_stable_id_cache($db_adaptor);
 

misc-scripts/regulatory_regions/RegulatoryFeatureParser/miranda.pm

@@ -38,7 +38,7 @@ sub parse {
   my %feature_objects;
   my %anal;
 
-  # TODO - regulatory_factor_transcripts
+  # TODO - regulatory_factor_coding
 
   my $stable_id_to_internal_id = $self->build_stable_id_cache($db_adaptor);