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Commit 1e27829e authored by Ian Longden's avatar Ian Longden
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SliceAdaptor check changed to show new changes to feath_all method

parent 34320c82
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......@@ -5,7 +5,7 @@ use warnings;
BEGIN { $| = 1;
use Test;
plan tests => 57;
plan tests => 56;
}
use MultiTestDB;
......@@ -336,18 +336,22 @@ ok($slice->strand == -1);
#
# test fetch_all
#
my $slices = $slice_adaptor->fetch_all('chromosome');
ok(@$slices == 62);
$slices = $slice_adaptor->fetch_all('chromosome', undef,1e6, 1e4);
#default no duplicates and reference only
my $slices = $slice_adaptor->fetch_all('chromosome',undef);
print_slices($slices);
ok(@$slices == 63);
# include duplicates
$slices = $slice_adaptor->fetch_all('chromosome', undef,0, 1);
print_slices($slices);
ok(@$slices == 3185);
ok(@$slices == 62);
$slices = $slice_adaptor->fetch_all('contig', undef, 50000);
$slices = $slice_adaptor->fetch_all('contig', undef);
ok(@$slices == 26);
ok(@$slices == 12);
print_slices($slices);
......@@ -357,11 +361,6 @@ $slices = $slice_adaptor->fetch_all('toplevel');
ok(@$slices == 1 && $slices->[0]->seq_region_name() eq '20');
print_slices($slices);
$slices = $slice_adaptor->fetch_all('toplevel', undef, 1e6, 1e4);
ok(@$slices == 64);
print_slices($slices);
#
# test the fuzzy matching of clone accessions
#
......
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