Add the sources 'Uniprot/SPTREMBL_predicted' and

'Uniprot/SWISSPROT_predicted' that are assumed to exist by
UniProtParser.

Set download=N for 'RefSeq_dna_predicted' and 'RefSeq_peptide_predicted'
(these are assumed to exist by the RefSeq parsers).

misc-scripts/xref_mapping/xref_config.ini

@@ -517,9 +517,9 @@ release_uri     =
 data_uri        = ftp://rgd.mcw.edu/pub/data_release/GENES
 
 [source RefSeq_dna_predicted]
-# Special source used in RefSeqParser
+# Special source used in RefSeqParser.  No species uses this source.
 name            = RefSeq_dna_predicted
-download        = Y
+download        = N
 order           = 20
 priority        = 1
 prio_descr      = 
@@ -749,9 +749,9 @@ release_uri     = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-rel
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/R_norvegicus/mRNA_Prot/rat.rna.fna.gz
 
 [source RefSeq_peptide_predicted]
-# Special source used in RefSeqGPFFParser
+# Special source used in RefSeqGPFFParser.  No species uses this source.
 name            = RefSeq_peptide_predicted
-download        = Y
+download        = N
 order           = 20
 priority        = 1
 prio_descr      = 
@@ -1210,6 +1210,17 @@ release_uri     = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG
 data_uri        = ftp://ftp.ncbi.nih.gov/repository/UniGene/Xenopus_tropicalis/Str.seq.uniq.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/repository/UniGene/Xenopus_tropicalis/Str.data.gz
 
+[source Uniprot/SPTREMBL_predicted]
+# Special source used in UniProtParser.  No species uses this source.
+name            = Uniprot/SPTREMBL_predicted
+download        = N
+order           = 20
+priority        = 1
+prio_descr      = 
+parser          = UniProtParser
+release_uri     = 
+data_uri        = 
+
 [source Uniprot/SPTREMBL::MULTI]
 # Used by drosophila_melanogaster, homo_sapiens, mus_musculus, rattus_norvegicus, danio_rerio, gallus_gallus, xenopus_tropicalis, canis_familiaris, caenorhabditis_elegans, apis_mellifera, ciona_intestinalis, ciona_savignyi, anopheles_gambiae, aedes_aegypti, bos_taurus, monodelphis_domestica, takifugu_rubripes, saccharomyces_cerevisiae, macaca_mulatta, loxodonta_africana, dasypus_novemcinctus, oryctolagus_cuniculus, echinops_telfairi, felis_catus, gasterosteus_aculeatus, oryzias_latipes, myotis_lucifugus, ornithorhynchus_anatinus, erinaceus_europaeus, tupaia_belangeri, spermophilus_tridecemlineatus
 name            = Uniprot/SPTREMBL
@@ -1221,6 +1232,17 @@ parser          = UniProtParser
 release_uri     = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz
 
+[source Uniprot/SWISSPROT_predicted]
+# Special source used in UniProtParser.  No species uses this source.
+name            = Uniprot/SWISSPROT_predicted
+download        = N
+order           = 20
+priority        = 1
+prio_descr      = 
+parser          = UniProtParser
+release_uri     = 
+data_uri        = 
+
 [source Uniprot/SWISSPROT::MULTI]
 # Used by drosophila_melanogaster, homo_sapiens, mus_musculus, rattus_norvegicus, danio_rerio, gallus_gallus, xenopus_tropicalis, canis_familiaris, caenorhabditis_elegans, apis_mellifera, ciona_intestinalis, ciona_savignyi, anopheles_gambiae, aedes_aegypti, bos_taurus, monodelphis_domestica, takifugu_rubripes, saccharomyces_cerevisiae, macaca_mulatta, loxodonta_africana, dasypus_novemcinctus, oryctolagus_cuniculus, echinops_telfairi, felis_catus, gasterosteus_aculeatus, oryzias_latipes, myotis_lucifugus, ornithorhynchus_anatinus, erinaceus_europaeus, tupaia_belangeri, spermophilus_tridecemlineatus
 name            = Uniprot/SWISSPROT