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ensembl-gh-mirror
ensembl
Commits
2518cd00
Commit
2518cd00
authored
17 years ago
by
Patrick Meidl
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first go at DAS handling
parent
47d2e326
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1 changed file
modules/Bio/EnsEMBL/MappedSlice.pm
+38
-0
38 additions, 0 deletions
modules/Bio/EnsEMBL/MappedSlice.pm
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0 deletions
modules/Bio/EnsEMBL/MappedSlice.pm
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View file @
2518cd00
...
...
@@ -223,6 +223,43 @@ sub project {
}
sub
get_all_DASFeatures_dsn
{
my
$self
=
shift
;
foreach
my
$pair
(
@
{
$self
->
get_all_Slice_Mapper_pairs
})
{
my
(
$slice
,
$mapper
)
=
@$pair
;
# call $method on each native slice composing the MappedSlice
my
(
$featref
,
$styleref
,
$segref
)
=
@
{
$slice
->
get_all_DASFeatures_dsn
(
@
_
)
};
use
Data::
Dumper
;
warn
Data::Dumper::
Dumper
(
$featref
);
warn
Data::Dumper::
Dumper
(
$styleref
);
warn
Data::Dumper::
Dumper
(
$segref
);
}
}
sub
get_all_DAS_Features
{
my
$self
=
shift
;
foreach
my
$pair
(
@
{
$self
->
get_all_Slice_Mapper_pairs
})
{
my
(
$slice
,
$mapper
)
=
@$pair
;
print
"
\n
Fetching DAS features for
"
.
$slice
->
name
.
"
\n
";
# call $method on each native slice composing the MappedSlice
my
(
$featref
,
$styleref
,
$segref
)
=
$slice
->
get_all_DAS_Features
;
return
(
$featref
,
$styleref
,
$segref
);
}
}
=head2
Arg[1] :
...
...
@@ -250,6 +287,7 @@ sub AUTOLOAD {
foreach
my
$pair
(
@
{
$self
->
get_all_Slice_Mapper_pairs
})
{
my
(
$slice
,
$mapper
)
=
@$pair
;
#warn $slice->name;
# call $method on each native slice composing the MappedSlice
my
@features
=
@
{
$slice
->
$method
(
@
_
)
};
...
...
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