Add proper canonical_transcript_ids to the test gene data.

26164464 · Andreas Kusalananda Kähäri · edb73680 · 26164464
Commit 26164464 authored 15 years ago by Andreas Kusalananda Kähäri
--- a/modules/t/test-genome-DBs/homo_sapiens/core/gene.txt
+++ b/modules/t/test-genome-DBs/homo_sapiens/core/gene.txt
 18256	protein_coding	1282	469283	30274334	30300924	1	152202	ensembl	KNOWN	DJ310O13.1.2 (NOVEL PROTEIN SIMILAR DROSOPHILA PROTEIN CG7474, ISOFORM 2 ) (FRAGMENT). [Source:SPTREMBL;Acc:Q9BR18]	1	21716	longest transcript in gene
-18257	protein_coding	1282	469283	30301733	30318881	1	0	ensembl	NOVEL	\N	1	0	\N
-18258	protein_coding	1282	469283	30320853	30327869	-1	40090	vega	KNOWN	\N	1	0	\N
-18259	protein_coding	1282	469283	30371004	30372906	1	102413	ensembl	KNOWN	DJ310O13.4 (NOVEL PROTEIN SIMILAR TO PREDICTED C. ELEGANS AND C. INTESTINALIS PROTEINS) (FRAGMENT). [Source:SPTREMBL;Acc:Q9NUG5]	1	0	\N
-18260	protein_coding	1282	469283	30386305	30408041	1	34986	vega	KNOWN	\N	1	0	\N
-18261	protein_coding	1282	469283	30428114	30477716	1	158525	ensembl	KNOWN	TYROSINE-PROTEIN KINASE HCK (EC 2.7.1.112) (P59-HCK AND P60-HCK) (HEMOPOIETIC CELL KINASE). [Source:SWISSPROT;Acc:P08631]	1	0	\N
-18262	protein_coding	1282	469283	30485596	30543114	1	120576	ensembl	KNOWN	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER 4. [Source:SWISSPROT;Acc:Q92544]	1	0	\N
-18263	protein_coding	1282	469283	30565065	30566129	-1	128607	ensembl	KNOWN	BA392M18.1 (NOVEL PROTEIN SIMILAR TO TESTIS SPECIFIC PROTEIN TSPY). [Source:SPTREMBL;Acc:Q9H489]	1	0	\N
-18264	protein_coding	1282	469283	30568364	30583588	-1	17034	ensembl	KNOWN	ZINC FINGER PROTEIN PLAGL2 (PLEIOMORPHIC ADENOMA-LIKE PROTEIN 2). [Source:SWISSPROT;Acc:Q9UPG8]	1	1	\N
-18265	protein_coding	1282	469283	30583753	30614524	1	128597	ensembl	KNOWN	GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 PRECURSOR (EC 2.4.1.-) (O- FUCOSYLTRANSFERASE) (O-FUCT-1). [Source:SPTREMBL;Acc:Q9H488]	1	0	\N
-18266	protein_coding	1282	469283	30653524	30709209	1	28819	ensembl	KNOWN	KINESIN-LIKE PROTEIN KIF3B (MICROTUBULE PLUS END-DIRECTED KINESIN MOTOR 3B) (HH0048). [Source:SWISSPROT;Acc:O15066]	1	0	1
-18267	protein_coding	1282	469283	30735607	30815178	1	128324	ensembl	KNOWN	BA358N2.1 (KIAA0978) (FRAGMENT). [Source:SPTREMBL;Acc:Q9H466]	1	0	\N
-18268	protein_coding	1282	469283	30822726	30859269	-1	34892	ensembl	KNOWN	\N	1	0	\N
-18269	protein_coding	1282	469283	30885729	30911383	-1	89323	ensembl	KNOWN	DJ1184F4.4 (NOVEL PROTEIN SIMILAR TO NUCLEOLAR PROTEIN 4 (NOL4) (NOLP)). [Source:SPTREMBL;Acc:Q9NQF5]	1	0	\N
-18270	protein_coding	1282	469283	31070930	31071301	-1	332	ensembl	KNOWN	\N	1	0	\N
-18271	protein_coding	1282	469283	31074431	31089984	-1	168324	ensembl	KNOWN	\N	1	0	\N
-18272	protein_coding	1282	469283	31108924	31155894	1	15966	ensembl	KNOWN	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3B (EC 2.1.1.37) (DNMT3B) (DNA METHYLTRANSFERASE HSAIIIB) (DNA MTASE HSAIIIB) (M.HSAIIIB). [Source:SWISSPROT;Acc:Q9UBC3]	1	0	\N
-18273	protein_coding	1282	469283	31166507	31196939	1	97759	ensembl	KNOWN	MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 (APC-BINDING PROTEIN EB1). [Source:SWISSPROT;Acc:Q15691]	1	1	\N
-18274	protein_coding	1282	469283	31210077	31225346	1	0	ensembl	NOVEL	\N	1	1	\N
-18275	protein_coding	1282	965899	10060	10405	1	0	ensembl	NOVEL	\N	1	1	\N
+18257	protein_coding	1282	469283	30301733	30318881	1	0	ensembl	NOVEL	\N	1	21718	\N
+18258	protein_coding	1282	469283	30320853	30327869	-1	40090	vega	KNOWN	\N	1	21719	\N
+18259	protein_coding	1282	469283	30371004	30372906	1	102413	ensembl	KNOWN	DJ310O13.4 (NOVEL PROTEIN SIMILAR TO PREDICTED C. ELEGANS AND C. INTESTINALIS PROTEINS) (FRAGMENT). [Source:SPTREMBL;Acc:Q9NUG5]	1	21720	\N
+18260	protein_coding	1282	469283	30386305	30408041	1	34986	vega	KNOWN	\N	1	21721	\N
+18261	protein_coding	1282	469283	30428114	30477716	1	158525	ensembl	KNOWN	TYROSINE-PROTEIN KINASE HCK (EC 2.7.1.112) (P59-HCK AND P60-HCK) (HEMOPOIETIC CELL KINASE). [Source:SWISSPROT;Acc:P08631]	1	21723	\N
+18262	protein_coding	1282	469283	30485596	30543114	1	120576	ensembl	KNOWN	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER 4. [Source:SWISSPROT;Acc:Q92544]	1	21724	\N
+18263	protein_coding	1282	469283	30565065	30566129	-1	128607	ensembl	KNOWN	BA392M18.1 (NOVEL PROTEIN SIMILAR TO TESTIS SPECIFIC PROTEIN TSPY). [Source:SPTREMBL;Acc:Q9H489]	1	21725	\N
+18264	protein_coding	1282	469283	30568364	30583588	-1	17034	ensembl	KNOWN	ZINC FINGER PROTEIN PLAGL2 (PLEIOMORPHIC ADENOMA-LIKE PROTEIN 2). [Source:SWISSPROT;Acc:Q9UPG8]	1	21726	\N
+18265	protein_coding	1282	469283	30583753	30614524	1	128597	ensembl	KNOWN	GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 PRECURSOR (EC 2.4.1.-) (O- FUCOSYLTRANSFERASE) (O-FUCT-1). [Source:SPTREMBL;Acc:Q9H488]	1	21728	\N
+18266	protein_coding	1282	469283	30653524	30709209	1	28819	ensembl	KNOWN	KINESIN-LIKE PROTEIN KIF3B (MICROTUBULE PLUS END-DIRECTED KINESIN MOTOR 3B) (HH0048). [Source:SWISSPROT;Acc:O15066]	1	21729	1
+18267	protein_coding	1282	469283	30735607	30815178	1	128324	ensembl	KNOWN	BA358N2.1 (KIAA0978) (FRAGMENT). [Source:SPTREMBL;Acc:Q9H466]	1	21731	\N
+18268	protein_coding	1282	469283	30822726	30859269	-1	34892	ensembl	KNOWN	\N	1	21732	\N
+18269	protein_coding	1282	469283	30885729	30911383	-1	89323	ensembl	KNOWN	DJ1184F4.4 (NOVEL PROTEIN SIMILAR TO NUCLEOLAR PROTEIN 4 (NOL4) (NOLP)). [Source:SPTREMBL;Acc:Q9NQF5]	1	21734	\N
+18270	protein_coding	1282	469283	31070930	31071301	-1	332	ensembl	KNOWN	\N	1	21735	\N
+18271	protein_coding	1282	469283	31074431	31089984	-1	168324	ensembl	KNOWN	\N	1	21736	\N
+18272	protein_coding	1282	469283	31108924	31155894	1	15966	ensembl	KNOWN	DNA (CYTOSINE-5)-METHYLTRANSFERASE 3B (EC 2.1.1.37) (DNMT3B) (DNA METHYLTRANSFERASE HSAIIIB) (DNA MTASE HSAIIIB) (M.HSAIIIB). [Source:SWISSPROT;Acc:Q9UBC3]	1	21737	\N
+18273	protein_coding	1282	469283	31166507	31196939	1	97759	ensembl	KNOWN	MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 (APC-BINDING PROTEIN EB1). [Source:SWISSPROT;Acc:Q15691]	1	21738	\N
+18274	protein_coding	1282	469283	31210077	31225346	1	0	ensembl	NOVEL	\N	1	21739	\N
+18275	protein_coding	1282	965899	10060	10405	1	0	ensembl	NOVEL	\N	1	21740	\N