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ensembl-gh-mirror
ensembl
Commits
26ace380
Commit
26ace380
authored
13 years ago
by
Nathan Johnson
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added POD for fetch_Iterator_by_Slice
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modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
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modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
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26ace380
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@@ -259,6 +259,26 @@ sub fetch_Iterator_by_Slice_method{
}
=head2 fetch_Iterator_by_Slice
Arg [1] : Bio::EnsEMBL::Slice
Arg [2] : Optional string: logic name of analysis
Arg [3] : Optional int: Chunk size to iterate over. Default is 500000
Example : my $slice_iter = $feature_adaptor->fetch_Iterator_by_Slice($slice);
while(my $feature = $slice_iter->next && defined $feature){
#Do something here
}
Description: Creates an Iterator which chunks the query Slice to facilitate
large Slice queries which would have previously run out of memory
Returntype : Bio::EnsEMBL::Utils::Iterator
Exceptions : None
Caller : general
Status : at risk
=cut
sub
fetch_Iterator_by_Slice
{
my
(
$self
,
$slice
,
$logic_name
,
$chunk_size
)
=
@_
;
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