useful SQL for stable ID mapping

misc-scripts/id_mapping/utils/id_mapping_clean.sql

+#
+# some useful stable ID mapping related SQL
+# just fragments for copy/paste, not intended to be run as an "SQL script"
+#
+
+# get counts from all stable ID related tables
+SELECT COUNT(*) FROM gene_stable_id;
+SELECT COUNT(*) FROM transcript_stable_id;
+SELECT COUNT(*) FROM translation_stable_id;
+SELECT COUNT(*) FROM exon_stable_id;
+SELECT COUNT(*) FROM mapping_session;
+SELECT COUNT(*) FROM stable_id_event;
+SELECT COUNT(*) FROM gene_archive;
+SELECT COUNT(*) FROM peptide_archive;
+
+# backup all stable ID related tables
+CREATE TABLE gene_stable_id_bak SELECT * FROM gene_stable_id;
+CREATE TABLE transcript_stable_id_bak SELECT * FROM transcript_stable_id;
+CREATE TABLE translation_stable_id_bak SELECT * FROM translation_stable_id;
+CREATE TABLE exon_stable_id_bak SELECT * FROM exon_stable_id;
+CREATE TABLE mapping_session_bak SELECT * FROM mapping_session;
+CREATE TABLE stable_id_event_bak SELECT * FROM stable_id_event;
+CREATE TABLE gene_archive_bak SELECT * FROM gene_archive;
+CREATE TABLE peptide_archive_bak SELECT * FROM peptide_archive;
+
+# now prune all of them
+DELETE FROM gene_stable_id;
+DELETE FROM transcript_stable_id;
+DELETE FROM translation_stable_id;
+DELETE FROM exon_stable_id;
+DELETE FROM mapping_session;
+DELETE FROM stable_id_event;
+DELETE FROM gene_archive;
+DELETE FROM peptide_archive;
+