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ensembl-gh-mirror
ensembl
Commits
275edf76
Commit
275edf76
authored
22 years ago
by
James Gilbert
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pod fix and commented out unimplemented method
parent
66f6f1a5
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modules/Bio/EnsEMBL/Chromosome.pm
+1
-0
1 addition, 0 deletions
modules/Bio/EnsEMBL/Chromosome.pm
modules/Bio/EnsEMBL/Tile.pm
+23
-22
23 additions, 22 deletions
modules/Bio/EnsEMBL/Tile.pm
with
24 additions
and
22 deletions
modules/Bio/EnsEMBL/Chromosome.pm
+
1
−
0
View file @
275edf76
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@@ -37,6 +37,7 @@ use Bio::EnsEMBL::Root;
## Changes to new by James Smith - no longer takes statistics
## on creation.. these get added later.
=head2 new
Args [...] : List of named arguments
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modules/Bio/EnsEMBL/Tile.pm
+
23
−
22
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275edf76
...
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@@ -14,7 +14,7 @@ Bio::EnsEMBL::Tile - container objects for assembly style information
=head1 SYNOPSIS
@
tile_list = $slice->get_tiling_path()
$
tile_list = $slice->get_tiling_path()
=head1 DESCRIPTION
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@@ -50,27 +50,28 @@ use Bio::EnsEMBL::Root;
@ISA
=
qw(Bio::EnsEMBL::Root)
;
sub
new
{
my
(
$class
,
@args
)
=
@_
;
my
$self
=
{};
bless
$self
,
$class
;
my
(
$assembled_seq
,
$assembled_start
,
$assembled_end
,
$component_seq
,
$component_start
,
$component_end
,
$component_ori
)
=
$self
->
_rearrange
([
qw(ASSEMBLED_SEQ
ASSEMBLED_START
ASSEMBLED_END
COMPONENT_SEQ
COMPONENT_START
COMPONENT_END
COMPONENT_ORI
)
],
@args
);
return
$self
;
}
### JGRG - commented out non-functional new method
#sub new {
# my($class,@args) = @_;
#
# my $self = {};
# bless $self,$class;
#
# my ($assembled_seq,$assembled_start,$assembled_end,
# $component_seq, $component_start, $component_end,
# $component_ori ) =
# $self->_rearrange([qw(ASSEMBLED_SEQ
# ASSEMBLED_START
# ASSEMBLED_END
# COMPONENT_SEQ
# COMPONENT_START
# COMPONENT_END
# COMPONENT_ORI
# )],
# @args);
#
# return $self;
#}
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