Merge pull request #86 from Ensembl/experimental/merged_alternative_sequence_store (27719a31) · Commits · ensembl-gh-mirror / ensembl · GitLab

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27719a31

Commit 27719a31 authored 9 years ago by

Magali Ruffier

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Merge pull request #86 from Ensembl/experimental/merged_alternative_sequence_store

Experimental/merged alternative sequence store

parents f5c014c8 e3b11aac

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misc-scripts/utilities/index_fasta.pl 38 additions, 0 deletions

misc-scripts/utilities/index_fasta.pl
misc-scripts/xref_mapping/XrefMapper/SubmitMapper.pm 2 additions, 3 deletions

misc-scripts/xref_mapping/XrefMapper/SubmitMapper.pm
modules/Bio/EnsEMBL/DBSQL/BaseSequenceAdaptor.pm 328 additions, 0 deletions

modules/Bio/EnsEMBL/DBSQL/BaseSequenceAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/FastaSequenceAdaptor.pm 155 additions, 0 deletions

modules/Bio/EnsEMBL/DBSQL/FastaSequenceAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm 119 additions, 184 deletions

modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm
modules/Bio/EnsEMBL/Utils/IO/FileFaidx.pm 469 additions, 0 deletions

modules/Bio/EnsEMBL/Utils/IO/FileFaidx.pm
modules/t/fastaSequenceAdaptor.t 81 additions, 0 deletions

modules/t/fastaSequenceAdaptor.t
modules/t/fileFaidx.t 123 additions, 0 deletions

modules/t/fileFaidx.t
modules/t/slice.t 3 additions, 2 deletions

modules/t/slice.t

with 1318 additions and 189 deletions

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