remove tests for deleted code

modules/t/sliceVariation.t

@@ -53,53 +53,9 @@ is(scalar @$vfs, 1, 'get_all_somatic_VariationFeatures');
 $vfs = $slice->get_all_somatic_VariationFeatures_by_source('dbSNP');
 is(scalar @$vfs, 1, 'get_all_somatic_VariationFeatures_by_source');
 
-$vfs = $slice->get_all_VariationFeatures_with_phenotype;
-is(scalar @$vfs, 1, 'get_all_VariationFeatures_with_phenotype');
-
 $vfs = $slice->get_all_somatic_VariationFeatures_with_phenotype;
 is(scalar @$vfs, 1, 'get_all_somatic_VariationFeatures_with_phenotype');
 
-my $svfs = $slice->get_all_StructuralVariationFeatures;
-is(scalar @$svfs, 1, 'get_all_StructuralVariationFeatures');
-
-$svfs = $slice->get_all_somatic_StructuralVariationFeatures;
-is(scalar @$svfs, 1, 'get_all_somatic_StructuralVariationFeatures');
-
-my $size_min         = 1;
-my $size_max         = 10000;
-my $include_evidence = 0;
-$svfs = $slice->get_all_StructuralVariationFeatures_by_size_range($size_min, $size_max, $include_evidence);
-is(scalar @$svfs, 1, 'get_all_StructuralVariationFeatures_by_size_range');
-
-$svfs = $slice->get_all_somatic_StructuralVariationFeatures_by_size_range($size_min, $size_max, $include_evidence);
-is(scalar @$svfs, 1, 'get_all_somatic_StructuralVariationFeatures_by_size_range');
-
-my $study = $study_adaptor->fetch_by_name('study_name');
-$svfs = $slice->get_all_StructuralVariationFeatures_by_Study($study);
-is(scalar @$svfs, 3, 'get_all_StructuralVariationFeatures_by_Study');
-
-$svfs = $slice->get_all_StructuralVariationFeatures_by_source('dbSNP');
-is(scalar @$svfs, 1, 'get_all_StructuralVariationFeatures_by_source');
-
-$svfs = $slice->get_all_somatic_StructuralVariationFeatures_by_source('dbSNP');
-is(scalar @$svfs, 1, 'get_all_somatic_StructuralVariationFeatures_by_source');
-
-my $variation_set = $variation_set_adaptor->fetch_by_name('variation_set');
-$vfs = $slice->get_all_VariationFeatures_by_VariationSet($variation_set);
-is(scalar @$vfs, 2, 'get_all_VariationFeatures_by_VariationSet');
-
-$svfs = $slice->get_all_StructuralVariationFeatures_by_VariationSet($variation_set);
-is(scalar @$svfs, 2, 'get_all_StructuralVariationFeatures_by_VariationSet');
-
-my $pfs = $slice->get_all_PhenotypeFeatures;
-is(scalar @$pfs, 2, 'get_all_PhenotypeFeatures');
-
-$svfs = $slice->get_all_CopyNumberVariantProbeFeatures;
-is(scalar @$svfs, 1, 'get_all_CopyNumberVariantProbeFeatures');
-
-$vfs = $slice->get_all_genotyped_VariationFeatures;
-is(scalar @$vfs, 1, 'get_all_genotyped_VariationFeatures');
-
 my $population = $population_adaptor->fetch_by_name('population');
 $vfs = $slice->get_all_VariationFeatures_by_Population($population);
 is(scalar @$vfs, 1, 'get_all_VariationFeatures_by_Population');