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Commit 2a1034ef authored by Magali Ruffier's avatar Magali Ruffier
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silly lsf has become very picky, so memory requirements need to be at the end...

silly lsf has become very picky, so memory requirements need to be at the end of the block, and separated by a comma, not a colon
rusage[mem=1500:tmp=128] becomes rusage[tmp=128, mem=1500]
parent baf7b06d
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......@@ -123,7 +123,7 @@ sub resubmit_exonerate {
my $queue = $self->mapper->farm_queue || 'long';
my $usage = '-M 1500000 -R"select[mem>1500] rusage[mem=1500:tmp='.$disk_space_needed.']" -J "'.$unique_name.'" -q '.$queue;
my $usage = '-M 1500000 -R"select[mem>1500] rusage[tmp='.$disk_space_needed.', mem=1500]" -J "'.$unique_name.'" -q '.$queue;
my $com = "bsub $usage -o $root_dir/$outfile -e $root_dir/$errfile ".$exe_file;
......@@ -265,7 +265,7 @@ EON
my $queue = $self->mapper->farm_queue || 'long';
my $usage = "-q $queue ".'-M 1500000 -R"select[mem>1500] rusage[mem=1500:tmp='.$disk_space_needed.']" '.'-J "'.$unique_name.'[1-'.$num_jobs.']%200" -o '.$prefix.'.%J-%I.out -e '.$prefix.'.%J-%I.err';
my $usage = "-q $queue ".'-M 1500000 -R"select[mem>1500] rusage[tmp='.$disk_space_needed.', mem=1500]" '.'-J "'.$unique_name.'[1-'.$num_jobs.']%200" -o '.$prefix.'.%J-%I.out -e '.$prefix.'.%J-%I.err';
my $command = $exe." ".$query." ".$target.' --querychunkid $LSB_JOBINDEX --querychunktotal '.$num_jobs.' --showvulgar false --showalignment FALSE --ryo "xref:%qi:%ti:%ei:%ql:%tl:%qab:%qae:%tab:%tae:%C:%s\n" '.$options_str;
......
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