Commit 2cfd651e authored by Karyn Megy's avatar Karyn Megy
Browse files

Add and update VectorBase stuff

parent 4fd9afad
......@@ -2120,8 +2120,8 @@ priority = 1
prio_descr =
parser = UniGeneParser
release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Culex_pipiens/Cpi.seq.uniq.gz
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Culex_pipiens/Cpi.data.gz
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Culex_quinquefasciatus/Cpi.seq.uniq.gz
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Culex_quinquefasciatus/Cpi.data.gz
[source UniGene::danio_rerio]
# Used by danio_rerio
......@@ -2728,16 +2728,6 @@ parser = ncRNA_DBParser
release_uri =
data_uri = script:host=>genebuild7,port=>3306,dbname=>sw4_ncRNA_Xrefs,
[source ncRNA::culex_pipiens]
name = ncRNA_Culex
download = Y
order = 70
priority = 1
prio_descr =
parser = ncRNAParser
release_uri =
data_uri = file:/lustre/work1/ensembl/kmegy/Culex/Xrefs/culex_ncRNAxref_sw4.txt
[source RFAM_gene_name]
# Used homo_sapiens,mus_musculus
name = RFAM_gene_name
......@@ -2904,7 +2894,6 @@ parser = DirectParser
release_uri =
data_uri = file:tetraodon_nigroviridis/genoscope_translation_list
[source Genoscope_annotated_gene::tetraodon_nigroviridis]
# Used by
name = Genoscope_annotated_gene
......@@ -2916,6 +2905,43 @@ parser = DirectParser
release_uri =
data_uri = file:tetraodon_nigroviridis/genescope_annotated_gene_list
[source PubMed_citations::anopheles_gambiae]
# Used by Anopheles gambiae
name = PubMed_citations
download = Y
order = 40
priority = 1
prio_descr =
parser = VBPubMedParser
release_uri =
data_uri = file:PubMed/PubMed_citations_Anopheles_gambiae_PEST.txt
[source PubMed_citations::aedes_aegypti]
# Used by Aedes aegypti
name = PubMed_citations
download = Y
order = 40
priority = 1
prio_descr =
parser = VBPubMedParser
release_uri =
data_uri = file:PubMed/PubMed_citations_Aedes_aegypti_Liverpool.txt
[source Ribosomal_Protein_Gene_DB::anopheles_gambiae]
# Used by Anopheles gambiae
name = Ribosomal_Protein_Gene_DB
download = Y
order = 40
priority = 1
prio_descr =
parser = VBribosomalParser
release_uri =
data_uri = file:Ribosomal_Protein_Gene_Database/RPG_Anopheles_gambiae_PEST.txt
########################################################################
# SPECIES #
# #
......@@ -2943,6 +2969,7 @@ source = ImmunoDB::aedes_aegypti
source = VB_External_Description::aedes_aegypti
source = VB_RNA_Description::aedes_aegypti
source = VB_Community_Annotation::aedes_aegypti
source = PubMed_citations::aedes_aegypti
[species acyrthosiphon_pisum]
taxonomy_id = 7029
......@@ -2988,6 +3015,8 @@ source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = VB_RNA_Description::anopheles_gambiae
source = ImmunoDB::anopheles_gambiae
source = PubMed_citations::anopheles_gambiae
source = Ribosomal_Protein_Gene_DB::anopheles_gambiae
[species apis_mellifera]
taxonomy_id = 7460
......@@ -3270,7 +3299,7 @@ source = Interpro::MULTI
source = UniGene::culex_quinquefasciatus
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = ncRNA::culex_pipiens
source = ncRNA::culex_quinquefasciatus
source = ImmunoDB::culex_quinquefasciatus
source = VB_External_Description::culex_quinquefasciatus
source = VB_RNA_Description::culex_quinquefasciatus
......@@ -3835,6 +3864,18 @@ source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = ncRNA::MULTI
[species pediculus_humanus]
taxonomy_id = 121225
aliases = pediculushumanus, pediculus, phumanus
source = EntrezGene::MULTI
source = GO::MULTI
source = goslim_goa::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = UniGene::aedes_aegypti
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
[species pongo_pygmaeus]
taxonomy_id = 9600
aliases = pongopygmaeus, ppygmaeus, orangutan, orang
......
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