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Commit 2ee9857f authored by Susan Fairley's avatar Susan Fairley
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Modified cdna_exonerate entries.

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157 Mono_ab_initio_RepeatMask Interspersed repeats and low complexity sequence identified by <a rel="external" href="http://www.repeatmasker.org/">RepeatMasker</a> using ab initio repeat profiles specific to Monodelphis. Repeats (Recon) 1
158 Prints Protein fingerprints (groups of conserved motifs) are aligned to the genome. These motifs come from the <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/abstract/31/1/400?maxtoshow=&amp;HITS=10&amp;hits=10&amp;RESULTFORMAT=1&amp;author1=Attwood&amp;andorexacttitle=and&amp;andorexacttitleabs=and&amp;andorexactfulltext=and&amp;searchid=1&amp;FIRSTINDEX=0&amp;sortspec=relevance&amp;resourcetype=HWCIT">PRINTS</a> database. Prints domain 1 {'type'=>'domain'}
159 mature_peptide Feature imported from <a rel="external" href="http://www.flybase.org">FlyBase</a>. Mature Peptide 1
160 cDNA_exonerate ESTs and cDNAs from Aedes placed on the genome with Exonerate EST 1 {'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
160 aedes_cdna_est ESTs and cDNAs from Aedes placed on the genome with Exonerate EST 1 {'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
161 EG3_Hs Evolutionary conserved regions ("Ecores") are inferred from alignments of the Human and Tetraodon genomes by <a rel="external" href="http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html">Exofish, H. Roest Crollius et al.,</a> and grouped into contiguous, consistent sets ("Ecotigs") Human Ecores 1 {'default' => {'contigviewbottom' => 'stack'}}
162 DrosophilaBlast WuBLASTX of genomic segments against FlyBase Drosophila protein set Drosophila BLAST 1
163 Expression_pattern This sequence has been shown to be expressed in situ hybridisation experiments. The complete expression data collection is hosted by <a href="http://zfin.org/cgi-bin/webdriver?MIval=aa-xpatselect.apg">ZFIN</a> Expression pattern 1 {'type'=>'est'}
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283 FANTOM_GSC_PET_raw These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel="external" href="http://fantom.gsc.riken.go.jp/">Riken Fantom</a> project and aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Fantom GSC raw 0
284 AlignOligoProbes Microarray probes aligned to the genome, if probe sequences are provided by the manufacturer. Aligned oligo 0
285 GIS_PET_Encode See <a href="/Homo_sapiens_ditags/GIS_PET.html">method</a> described here. Ditags (GIS Encode) 0
286 cdna_exonerate 0
286 cdna_exonerate cDNA sequences are mapped onto the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
287 SimilarityGenewise 0
288 community_models Community provided transcript models from VB community_models 0
289 steve_human_cdna 0
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