Species-specific mapping file for elegans.

misc-scripts/xref_mapping/XrefMapper/caenorhabditis_elegans.pm

+package XrefMapper::caenorhabditis_elegans;
+
+use  XrefMapper::BasicMapper;
+
+use vars '@ISA';
+
+@ISA = qw{ XrefMapper::BasicMapper };
+
+sub get_set_lists {
+
+  return [["ExonerateGappedBest1", ["caenorhabditis_elegans","*"]]];
+
+}
+
+sub gene_description_filter_regexps {
+
+  return ('[0-9A-Z]+\.\d*[A-Z]* PROTEIN[ \.]',
+	  '\(\d[A-Z]\d+\)\.',
+	  '\([0-9A-Z]+\.\d*[A-Z]* PROTEIN\)[ \.]',
+	  '^\(*HYPOTHETICAL\s+.*',
+	  '^\s*\(FRAGMENT\)\.?\s*$' );
+
+}
+
+1;