Comment out RefSeq data files that do not actually exist on the FTP site.

Add RefSeq data files that do exists but that we don't list.

misc-scripts/xref_mapping/xref_config.ini

@@ -539,6 +539,10 @@ data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi1.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi10.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi11.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.rna.fna.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.rna.fna.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.rna.fna.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.rna.fna.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi2.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi3.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi4.rna.fna.gz
@@ -613,19 +617,19 @@ data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/ver
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian50.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.rna.fna.gz
@@ -643,9 +647,9 @@ data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebr
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.rna.fna.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.rna.fna.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.rna.fna.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.rna.fna.gz
 
 [source RefSeq_dna::apis_mellifera]
 # Used by apis_mellifera
@@ -770,6 +774,10 @@ data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi1.protein.gpf
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi10.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi11.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.protein.gpff.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.protein.gpff.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.protein.gpff.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.protein.gpff.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi2.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi3.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi4.protein.gpff.gz
@@ -795,6 +803,8 @@ data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrat
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate13.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate14.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate15.protein.gpff.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate16.protein.gpff.gz
+data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate17.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.protein.gpff.gz
@@ -869,19 +879,19 @@ data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/ver
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian50.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.protein.gpff.gz
@@ -899,9 +909,9 @@ data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebr
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.protein.gpff.gz
 data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.protein.gpff.gz
-data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.protein.gpff.gz
+#data_uri        = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.protein.gpff.gz
 
 [source RefSeq_peptide::apis_mellifera]
 # Used by apis_mellifera