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ensembl-gh-mirror
ensembl
Commits
3584199d
Commit
3584199d
authored
6 years ago
by
Marek Szuba
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RNAProduct: transcript() can now retrieve data from DB
parent
2414c08b
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2 merge requests
!371
Add support for mature RNA products of transcripts (e.g. MicroRNA) to the API and schema
,
!371
Add support for mature RNA products of transcripts (e.g. MicroRNA) to the API and schema
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1 changed file
modules/Bio/EnsEMBL/RNAProduct.pm
+13
-2
13 additions, 2 deletions
modules/Bio/EnsEMBL/RNAProduct.pm
with
13 additions
and
2 deletions
modules/Bio/EnsEMBL/RNAProduct.pm
+
13
−
2
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3584199d
...
...
@@ -404,8 +404,19 @@ sub transcript {
delete
(
$self
->
{'
transcript
'}
);
}
elsif
(
!
defined
(
$self
->
{'
transcript
'}))
{
warn
("
Cannot retrieve transcript from DB yet
");
my
$adaptor
=
$self
->
{'
adaptor
'};
if
(
!
defined
(
$adaptor
))
{
throw
("
Adaptor not set for rnaproduct, cannot fetch its transcript
");
}
my
$dbID
=
$self
->
{'
dbID
'};
if
(
!
defined
(
$dbID
))
{
throw
("
dbID not set for rnaproduct, cannot fetch its transcript.
");
}
$self
->
{'
transcript
'}
=
$adaptor
->
db
()
->
get_TranscriptAdaptor
()
->
fetch_by_rnaproduct_id
(
$dbID
);
# Do not weaken the reference if we had to get the transcript from the
# database. The user is probably working on rnaproducts directly,
...
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