Skip to content
Snippets Groups Projects
Commit 36ab2d21 authored by Monika Komorowska's avatar Monika Komorowska
Browse files

Updated instructions for creating an ontology database

parent 8158ad72
No related branches found
No related tags found
No related merge requests found
......@@ -244,16 +244,9 @@
3. Run script 'get_OBO_files.ksh' to download all the currently
handled ontologies.
4. As a prerequisite to the next step, you'll need to download
4. As a prerequisite to the next step, you'll need to install
ONTO-PERL modules from:
http://search.cpan.org/CPAN/authors/id/E/EA/EASR/ONTO-PERL/ONTO-PERL-1.31.tar.gz
Save the modules in the same directory where your checked out ensembl/ directory resides:
e.g. gunzip < ONTO-PERL-1.31.tar.gz | tar xvf -
Go to the ONTO-PERL-1.31 directory and test if you have all required modules
by running the following commands:
perl Makefile.PL
make
make test
5. Load the data from each downloaded ontology file into the database
using the script 'load_OBO_file.pl' (run the script without arguments
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment