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Commit 382ab390 authored by Kieron Taylor's avatar Kieron Taylor :angry:
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ENSCORESW-834 - Improvement of circular genome support in AlignFeatures.

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modules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm
+ 2
− 1
View file @ 382ab390
......@@ -184,7 +184,8 @@ FEATURE:
my $hstart = $feat->hstart();
my $hend = $feat->hend();
my $hstrand = $feat->hstrand();
$self->_check_start_end_strand( $hstart, $hend, $hstrand );
my $hslice = $feat->slice();
$self->_check_start_end_strand( $hstart, $hend, $hstrand, $hslice );
my $cigar_string = $feat->cigar_string();
if ( !$cigar_string ) {
......
modules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm
+ 2
− 1
View file @ 382ab390
......@@ -110,7 +110,8 @@ sub store{
#sanity check the hstart and hend
my $hstart = $feat->hstart();
my $hend = $feat->hend();
$self->_check_start_end_strand($hstart,$hend,1);
my $hslice = $feat->slice();
$self->_check_start_end_strand($hstart,$hend,1,$hslice);
my $cigar_string = $feat->cigar_string();
if(!$cigar_string) {
......
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