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Commit 397d6b07 authored by Magali Ruffier's avatar Magali Ruffier
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updated README

stable id lookup now also contains an archive_id_lookup table, which stores retired stable ids
also reduced the required memory
for release 74 and 66 species, it ran with less than 600Mb, no need to request 1.5G
parent cfe2f81e
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......@@ -16,6 +16,8 @@ core Exon
compara GeneTree
Family
For Gene, Transcript and Translation, an archive_id_lookup is also created, containing all previously used ids
Command to create the stable_id database on ens-staging1 and copy stable ids from databases on ens-staging1 and 2:
......@@ -26,8 +28,8 @@ USR=''
PASS=''
cd $DIR
bsub -q normal -M 1500000 -R'select[mem>1500] rusage[mem=1500]' -o ./stable_ids_${RELEASE}.out -e ./stable_ids_${RELEASE}.err perl populate_stable_id_lookup.pl \
bsub -q normal -M 700000 -R'select[mem>700] rusage[mem=700]' -o ./stable_ids_${RELEASE}.out -e ./stable_ids_${RELEASE}.err perl populate_stable_id_lookup.pl \
-lhost ens-staging1 -luser $USR -lpass $PASS -create -host ens-staging1 -host ens-staging2 -user ensro
For release 70 the job consumed 1Gb of memory and took 1hr 40 minutes to run
For release 74, the job consumed 584Mb of memory and took 1hr 53 minutes to run
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