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Commit 39faaf5f authored by Alessandro Vullo's avatar Alessandro Vullo Committed by Magali Ruffier
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[ENSCORESW-1846]. Reset to default queue if not known.

parent 1a4ae968
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......@@ -284,10 +284,11 @@ EON
my $output = $self->get_class_name() . "_" . $ensembl_type . "_" . "\$LSB_JOBINDEX.map";
my $queue = $self->mapper->farm_queue || 'normal';
my $queue = $self->mapper->farm_queue;
my $usage = "-q $queue ".'-M 1500 -R"select[mem>1500] rusage[tmp='.$disk_space_needed.', mem=1500]" '.'-J "'.$unique_name.'[1-'.$num_jobs.']%200" -o '.$prefix.'.%J-%I.out -e '.$prefix.'.%J-%I.err';
my $usage = '-M 1500 -R"select[mem>1500] rusage[tmp='.$disk_space_needed.', mem=1500]" '.'-J "'.$unique_name.'[1-'.$num_jobs.']%200" -o '.$prefix.'.%J-%I.out -e '.$prefix.'.%J-%I.err';
$queue and $usage = "-q $queue " . $usage;
my $command = $exe." ".$query." ".$target.' --querychunkid $LSB_JOBINDEX --querychunktotal '.$num_jobs.' --showvulgar false --showalignment FALSE --ryo "xref:%qi:%ti:%ei:%ql:%tl:%qab:%qae:%tab:%tae:%C:%s\n" '.$options_str;
......
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