update get_set_list to use ExonerateGappedBest5_agam for RefSeq_mRNA and ncRNA (predicted) xrefs

3a5eb382 · Monika Komorowska · f8b5991f · 3a5eb382
Commit 3a5eb382 authored Jan 09, 2012 by Monika Komorowska
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misc-scripts/xref_mapping/XrefMapper/anopheles_gambiae.pm misc-scripts/xref_mapping/XrefMapper/anopheles_gambiae.pm +5 -1

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--- a/misc-scripts/xref_mapping/XrefMapper/anopheles_gambiae.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/anopheles_gambiae.pm
@@ -12,7 +12,11 @@ use vars '@ISA';

 sub get_set_lists {

-  return [["ExonerateGappedBest1_agam", ["anopheles_gambiae","*"]]];
+  return [["ExonerateGappedBest5_agam", ["anopheles_gambiae","RefSeq_mRNA"]],
+	  ["ExonerateGappedBest5_agam", ["anopheles_gambiae","RefSeq_mRNA_predicted"]],
+	  ["ExonerateGappedBest5_agam", ["anopheles_gambiae","RefSeq_ncRNA"]],
+	  ["ExonerateGappedBest5_agam", ["anopheles_gambiae","RefSeq_ncRNA_predicted"]],
+	  ["ExonerateGappedBest1_agam", ["anopheles_gambiae","*"]]];

 }