Commit 3b8268ac authored by Ian Longden's avatar Ian Longden
Browse files

curated transcript no longer used to get name but is used to get the...

curated transcript no longer used to get name but is used to get the transcript ext and is not transfered to the core database (hence _notransfer on the source name)
parent e4c6cefa
......@@ -48,8 +48,12 @@ sub run_script {
$source_prefix = "MGI";
$host = "ens-staging2";
}
elsif($species_name eq "danio_rerio" ){
$source_prefix = "ZFIN_ID";
$host = "ens-staging1";
}
else{
die "Species is $species_name and is not homo_sapines or mus_musculus the only two valid species\n";
die "Species is $species_name and is not homo_sapines, mus_musculus or danio_rerio the only three valid species\n";
}
if($my_args =~ /host[=][>](\S+?)[,]/){
......@@ -139,7 +143,7 @@ sub run_script {
my $clone_source_id =
$self->get_source_id_for_source_name('Clone_based_vega_transcript');
my $curated_source_id =
$self->get_source_id_for_source_name($source_prefix."_curated_transcript");
$self->get_source_id_for_source_name($source_prefix."_curated_transcript_notransfer");
print "source id is $source_id, curated_source_id is $curated_source_id\n";
......
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