Commit 3c114152 authored by Kevin Howe's avatar Kevin Howe
Browse files

For adjacent gaps in query and target, sanity checks "warning"ed on the

forward strand and "throw"ed on the reverse strand! Made them both
warnings.
parent 863c7cc9
......@@ -715,9 +715,9 @@ sub _parse_features {
#sanity check, Should not be an insertion and deletion
if($insertion_flag) {
throw("Should not be an deletion and insertion on the " .
"same alignment region. prev2 = $prev2; f->hend() = " .
$f->hend() . "; cigar_line = $string;\n");
warning("Should not be an deletion and insertion on the " .
"same alignment region. prev2 = $prev2; f->hend() = " .
$f->hend() . "; cigar_line = $string;\n");
}
}
#shift our position in the hit seq alignment
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment