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Commit 40a0eef6 authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
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Reduced shouting in title.

Updated requirements.
Other fixes.
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Guzzle
A STAND-ALONE PERL-BASED WEB DAS-CLIENT
A stand-alone Perl-based web das-client
Author:
......@@ -80,9 +80,10 @@
Data::Serializer required for being nice
to DAS servers (optional)
Bio::EnsEMBL::Mapper required for alignment mapping
(optional, and not currently
implemented)
Storable required for alignment
mapping (optional)
Bio::EnsEMBL::Mapper required for alignment
mapping (optional)
Most of these Perl modules have additional dependencies in themselves
(e.g. the Bio::Graphics module depends on the Perl GD module, which in
......@@ -146,11 +147,12 @@
unique. The file needs to be sorted.
* align (not implemented)
* align
Like the simpe mapping, but the mapping is dependent on
alignment information. This depends on the availability
of the Bio::EnsEMBL::Mapper module which is not part of
Bioperl.
Bioperl, and on Storable (which is standard in later
versions of Perl).
Format of map data file:
......@@ -178,11 +180,6 @@
Better suggestion for names are welcomed.
TO DO
Sequence ID translation and annotation mapping. Watch this space, I'm
working on it.
REFERENCES
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