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ensembl-gh-mirror
ensembl
Commits
40f715d5
Commit
40f715d5
authored
17 years ago
by
Martin Hammond
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adding aedes ensembl and generic uniprot types for align feature table data
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3dacf39e
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misc-scripts/external_db/external_dbs.txt
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misc-scripts/external_db/external_dbs.txt
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40f715d5
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@@ -55,7 +55,7 @@
1701 protein_id_predicted 1 PRED 1 0 4 Predicted Protein ID MISC \N \N
1800 RefSeq_dna 1 KNOWN 1 0 25 RefSeq DNA MISC \N \N
1805 RefSeq_dna_predicted 1 PRED 1 0 15 RefSeq DNA predicted MISC \N \N
1810 RefSeq_peptide 1 KNOWN 1 0 26 RefSeq peptide MISC \N \N
not defined
1810 RefSeq_peptide 1 KNOWN 1 0 26 RefSeq peptide MISC \N \N
1815 RefSeq_peptide_predicted 1 PRED 1 0 16 RefSeq peptide predicted MISC \N \N
1820 RefSeq_rna 1 KNOWN 1 0 24 RefSeq RNA MISC \N \N
1825 RefSeq_rna_predicted 1 PRED 1 0 14 RefSeq RNA predicted MISC \N \N
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@@ -71,6 +71,7 @@
2200 Uniprot/SWISSPROT 1 KNOWN 1 1 30 UniProtKB/Swiss-Prot MISC \N \N
2201 Uniprot/SWISSPROT_predicted 1 PRED 1 1 15 Predicted UniProtKB/Swiss-Prot MISC \N \N
2202 Uniprot/Varsplic 1 KNOWN 1 1 15 UniprotKB/SpliceVariant MISC \N \N
2250 UniProtKB_all 1 XREF 1 0 40 UniprotKB generic accession number (TrEMBL or SwissProt not differentiated) MISC \N \N
2300 Vega_gene 1 XREF 1 0 5 Vega gene MISC \N \N
2310 Vega_transcript 1 XREF 1 0 5 Vega transcript MISC \N \N
2320 Vega_translation 1 XREF 1 0 5 Vega translation MISC \N \N
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@@ -221,6 +222,7 @@
6750 Ens_Pt_gene 1 XREF 1 0 5 Ensembl Chimpanzee Gene MISC \N \N
6780 Ens_Rn_gene 1 XREF 1 0 5 Ensembl Rat Gene MISC \N \N
6810 Ens_Tn_gene 1 XREF 1 0 5 Ensembl PufferFish Gene MISC \N \N
7120 Ens_Aa_translation 1 XREF 1 0 40 Ensembl Aedes Translation MISC \N \N
7159 AedesGenBank 1 PRED 1 0 30 Aedes GenBank MISC \N \N
7200 IMGT/LIGM_DB 200641-6 XREF 1 1 10 IMGT/LIGM-DB MISC \N \N
7201 IMGT/GENE_DB 200641-6 KNOWN 1 0 40 IMGT/GENE-DB MISC \N \N
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