Major POD update, removal of reference to Ensembl::Lite

modules/Bio/EnsEMBL/Utils/ConfigRegistry.pm

@@ -50,18 +50,6 @@ use Bio::EnsEMBL::DBSQL::DBAdaptor;
 
 use Bio::EnsEMBL::Utils::Exception qw(warning throw  deprecate stack_trace_dump);
 
-=head2 load_core, load_otherfeatures, load_vega, load_compara, load_pipeline, load_SNP, load_lite
-  Arg [1]    : DBAdaptor with DBConnection alredy attached
-  Returntype : DBAdaptor;
-  Exceptions : none
-
-=cut
-
-#
-# 1) core. no need to add dnadb
-# 2) not core add dnadb
-# 3) 
-#
 
 
 sub gen_load {
@@ -252,22 +240,66 @@ sub load_and_attach_dnadb_to_core {
 }
 
 
+=head2 load_core
+  Arg [1]    : DBAdaptor with DBConnection already attached
+  Returntype : DBAdaptor
+  Exceptions : none
+=cut
 sub load_core      { load_adaptors(@_) }
+
+
+#
+# 1) core. no need to add dnadb
+# 2) not core add dnadb
+# 3) 
+#
+
+=head2 load_compara
+  Arg [1]    : DBAdaptor with DBConnection already attached
+  Returntype : DBAdaptor
+  Exceptions : none
+=cut
 sub load_compara   { load_adaptors(@_) }
+=head2 load_hive
+  Arg [1]    : DBAdaptor with DBConnection already attached
+  Returntype : DBAdaptor
+  Exceptions : none
+=cut
 sub load_hive      { load_adaptors(@_) }
+=head2 load_pipeline
+  Arg [1]    : DBAdaptor with DBConnection already attached
+  Returntype : DBAdaptor
+  Exceptions : none
+=cut
 sub load_pipeline  { load_adaptors(@_) }
-sub load_lite      { load_adaptors(@_) }
+=head2 load_SNP
+  Arg [1]    : DBAdaptor with DBConnection already attached
+  Returntype : DBAdaptor
+  Exceptions : none
+=cut
 sub load_SNP       { load_adaptors(@_) }
-sub load_variation { load_and_attach_dnadb_to_core(@_) }
-sub load_funcgen   { load_and_attach_dnadb_to_core(@_) }
 sub load_haplotype { load_adaptors(@_) }
 sub load_ontology  { load_adaptors(@_) }
 
 
-# these that need to attach to the core to get the sequense data
+# these that need to attach to the core to get the sequence data
 
 sub load_estgene       { load_and_attach_dnadb_to_core(@_) }
+
+sub load_variation { load_and_attach_dnadb_to_core(@_) }
+sub load_funcgen   { load_and_attach_dnadb_to_core(@_) }
+=head2 load_otherfeatures
+  Arg [1]    : DBAdaptor with DBConnection alredy attached
+  Returntype : DBAdaptor
+  Exceptions : none
+
+=cut
 sub load_otherfeatures { load_and_attach_dnadb_to_core(@_) }
+=head2 load_vega
+  Arg [1]    : DBAdaptor with DBConnection already attached
+  Returntype : DBAdaptor
+  Exceptions : none
+=cut
 sub load_vega          { load_and_attach_dnadb_to_core(@_) }