Skip to content
Snippets Groups Projects
Commit 48491029 authored by Kevin Howe's avatar Kevin Howe
Browse files

Added elephant, armadillo, rabbit, tenrec, cat

parent c1dbe6ef
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
misc-scripts/xref_mapping/sql/populate_metadata.sql
+ 87
− 1
View file @ 48491029
......@@ -33,9 +33,15 @@ INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (7165,180454
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (13616,13616, 'monodelphis_domestica', 'mono,opossum,possum,monodelphis,monodelphisdomestica');
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9544, 9544, 'macaca_mulatta', 'rmacaque, rhesus, rhesus macaque, macaque');
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9785, 9785, 'loxodonta_africana', 'elephant,lafricana,loxodontaafricana');
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9361, 9361, 'dasypus_novemcinctus', 'armadillo,dnovemcinctus,dasypusnovemcinctus');
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9986, 9986, 'oryctolagus_cuniculus', 'rabbit,ocuniculus,oryctolaguscuniculus');
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9371, 9371, 'echinops_telfairi', 'tenrec,etelfairi,echinopstelfairi');
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9685, 9685, 'felis_catus', 'cat,fcatus,feliscatus,moggy,tiddles');
INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (7159, 7159, 'aedes_aegypti', 'aedes,aedesaegypti,aaegypti');
################################################################################
# SOURCES - types of data we can read
......@@ -1378,4 +1384,84 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(1300, 9544,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser");
################################################################################
##------------------------------------------------------------------------------
##### elephant
## Uniprot
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(1, 9785, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(2, 9785, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9785, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser");
## GO
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9785,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser");
## Interpro
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9785,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser");
##------------------------------------------------------------------------------
##### armadillo
## Uniprot
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(1, 9361, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(2, 9361, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9361, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser");
## GO
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9361,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser");
## Interpro
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9361,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser");
##------------------------------------------------------------------------------
##### rabbit
## Uniprot
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(1, 9986, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(2, 9986, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9986, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser");
## GO
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9986,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser");
## Interpro
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9986,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser");
##------------------------------------------------------------------------------
##### tenrec
## Uniprot
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(1, 9371, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(2, 9371, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9371, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser");
## GO
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9371,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser");
## Interpro
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9371,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser");
##------------------------------------------------------------------------------
##### cat
## Uniprot
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(1, 9685, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\
(2, 9685, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9685, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser");
## GO
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9685,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser");
## Interpro
INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9685,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser");
##------------------------------------------------------------------------------
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment