Remove internal one-off script.

sql/rnaseq_update_version.sql

-CREATE PROCEDURE rnaseq_version_update()
-
-BLOCK1: BEGIN
- 
-DECLARE v_count INT;
-DECLARE v_stable_id varChar(128);
-DECLARE v_version INT;
-DECLARE done INT DEFAULT 0;
-
-DECLARE cur1 CURSOR FOR select count(1) , stable_id, version from gene_stable_id group by stable_id, version having count(1) > 1 ;
-DECLARE CONTINUE HANDLER FOR NOT FOUND SET done = TRUE;
-
-
-OPEN cur1;
-
-
-LOOP1: loop
-
-	SET done = FALSE;
-	FETCH cur1 INTO v_count, v_stable_id, v_version;
-
-	IF done THEN
-   		LEAVE LOOP1;
-	END IF;
-
-	BLOCK2: BEGIN
-
-	DECLARE v2_gene_id INT;
-	DECLARE v2_version INT;
-	DECLARE done2 INT DEFAULT 0;
-	DECLARE counter INT DEFAULT 0;
-	DECLARE initial_version INT; 
-
-	DECLARE cur2 CURSOR FOR	select g.gene_id, gs.version  from seq_region s, gene_stable_id gs, gene g where g.gene_id=gs.gene_id and s.seq_region_id =g.seq_region_id and stable_id = v_stable_id;
-	DECLARE CONTINUE HANDLER FOR NOT FOUND SET done2 = TRUE;
-	OPEN cur2;
-	SET counter = 0;
-	LOOP2: loop
-	       SET done2 = FALSE;
-	       FETCH cur2 INTO v2_gene_id, v2_version;
-
-	       IF done2 THEN
-   		  LEAVE LOOP2;
-	       END IF;
-	      
-	       SET counter = counter + 1;
-	       IF (counter = 1) THEN
-		SET initial_version = v2_version;
-	       END IF;
-	       IF (counter > 1) THEN
-	       	  UPDATE gene_stable_id set version = (initial_version + counter - 1)  where gene_id = v2_gene_id;
-	       END IF; 
-		  
-	END loop LOOP2;
-	CLOSE cur2;
-	
-	end BLOCK2;
-
-END loop LOOP1;
-
-CLOSE cur1;
-
-END BLOCK1;
-