Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
Open sidebar
ensembl-gh-mirror
ensembl
Commits
4d848292
Commit
4d848292
authored
Nov 22, 2011
by
Kieron Taylor
😠
Browse files
Fixed bug in FASTA serializing into GFF format
parent
c3eb026e
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
3 additions
and
3 deletions
+3
-3
modules/Bio/EnsEMBL/Utils/IO/GFFSerializer.pm
modules/Bio/EnsEMBL/Utils/IO/GFFSerializer.pm
+1
-1
modules/Bio/EnsEMBL/Utils/IO/Serializer.pm
modules/Bio/EnsEMBL/Utils/IO/Serializer.pm
+2
-2
No files found.
modules/Bio/EnsEMBL/Utils/IO/GFFSerializer.pm
View file @
4d848292
...
...
@@ -208,7 +208,7 @@ sub print_metadata {
my
$self
=
shift
;
my
$text
=
shift
;
my
$fh
=
$self
->
{'
filehandle
'};
print
$fh
"
\n
#
"
.
$text
.
"
\n
";
print
$fh
"
\n
#
"
.
$text
.
"
\n
";
}
...
...
modules/Bio/EnsEMBL/Utils/IO/Serializer.pm
View file @
4d848292
...
...
@@ -152,8 +152,8 @@ sub print_main_header {
sub
print_sequence
{
my
$self
=
shift
;
my
$slice
=
shift
;
print
"
##FASTA
\n
"
;
Bio::EnsEMBL::Utils::
SeqDumper
->
dump
(
$slice
,
'
FASTA
',
$self
->
{'
filehandle
'}
);
my
$fh
=
$self
->
{'
filehandle
'}
;
Bio::EnsEMBL::Utils::
SeqDumper
->
dump
_fasta
(
$slice
,
$fh
);
}
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment