(1) Updated sources for rattus_norvegicus - ncRNAs aren't run anymore.

(2) Updated URL for downloading GO file. URL is now
http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz.
("lastest-termdb" has been changed to "latest-termdb")

misc-scripts/xref_mapping/xref_config.ini

@@ -627,7 +627,7 @@ prio_descr      = main
 parser          = GOParser
 release_uri     = http://www.ebi.ac.uk/GOA/uniprot_release.html
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz
-data_uri        = http://archive.geneontology.org/lastest-termdb/go_daily-termdb.obo-xml.gz
+data_uri        = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz
 
 [source InterproGO::MULTI]
 # Used by all
@@ -661,7 +661,7 @@ prio_descr      = main
 parser          = GOParser
 release_uri     =
 data_uri        = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_association.zfin.gz
-data_uri        = http://archive.geneontology.org/lastest-termdb/go_daily-termdb.obo-xml.gz
+data_uri        = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz
 
 [source GO::homo_sapiens]
 # Used by homo_sapiens
@@ -673,7 +673,7 @@ prio_descr      = main
 parser          = GOParser
 release_uri     = http://www.ebi.ac.uk/GOA/HUMAN_release.html
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/gene_association.goa_human.gz
-data_uri        = http://archive.geneontology.org/lastest-termdb/go_daily-termdb.obo-xml.gz
+data_uri        = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz
 
 [source GO::mus_musculus]
 # Used by mus_musculus
@@ -685,7 +685,7 @@ prio_descr      = main
 parser          = GOParser
 release_uri     = http://www.ebi.ac.uk/GOA/MOUSE_release.html
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/MOUSE/gene_association.goa_mouse.gz
-data_uri        = http://archive.geneontology.org/lastest-termdb/go_daily-termdb.obo-xml.gz
+data_uri        = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz
 
 [source GO::mus_musculus#01]
  # Used by mus_musculus
@@ -697,7 +697,7 @@ data_uri        = http://archive.geneontology.org/lastest-termdb/go_daily-termdb
  parser          = GOParser
  release_uri     =
  data_uri        = http://www.geneontology.org/cgi-bin/downloadGOGA.pl/gene_association.mgi.gz
- data_uri        = http://archive.geneontology.org/lastest-termdb/go_daily-termdb.obo-xml.gz
+ data_uri        = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz
 
 [source GO::rattus_norvegicus]
 # Used by rattus_norvegicus
@@ -709,7 +709,7 @@ prio_descr      = main
 parser          = GOParser
 release_uri     = http://www.ebi.ac.uk/GOA/RAT_release.html
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/RAT/gene_association.goa_rat.gz
-data_uri        = http://archive.geneontology.org/lastest-termdb/go_daily-termdb.obo-xml.gz
+data_uri        = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz
 
 
 [source HPA::homo_sapiens]
@@ -2883,8 +2883,8 @@ source          = ncRNA::MULTI
 [species rattus_norvegicus]
 taxonomy_id     = 10116
 aliases         = rat, rattusnorvegicus, rnovegicus
-#source          = AgilentProbe::rattus_norvegicus
-#source          = Codelink::rattus_norvegicus
+#source          = AgilentProbe::rattus_norvegicus     # now dealt with by functional genomics team
+#source          = Codelink::rattus_norvegicus        # now dealt with by functional genomics team
 source          = EntrezGene::MULTI
 source          = GO::rattus_norvegicus
 source          = InterproGO::MULTI
@@ -2896,8 +2896,9 @@ source          = RefSeq_peptide::rattus_norvegicus
 source          = UniGene::rattus_norvegicus
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
-#source          = Uniprot/Varsplic::MULTI
-source          = ncRNA::MULTI
+#source          = Uniprot/Varsplic::MULTI   # not included anymore as users found it confusing 
+#source          = ncRNA::MULTI       # copied in separately after running Xrefs
+
 
 [species saccharomyces_cerevisiae]
 taxonomy_id     = 4932