Skip to content
Snippets Groups Projects
Commit 5415aea2 authored by Alessandro Vullo's avatar Alessandro Vullo
Browse files

Added SO terms to be able to perform SequenceOntologyMapper tests.

parent 18057903
No related branches found
No related tags found
No related merge requests found
......@@ -147,3 +147,13 @@
33677 3 N GO:0097100 supercoiled DNA binding "Interacting selectively and non-covalently with supercoiled DNA. During replication and transcription, template DNA is negatively supercoiled in the receding downstream DNA and positively supercoiled in the approaching downstream DNA." [GOC:pr, GOC:rph, PMID:20723754, PMID:21345933, Wikipedia:DNA_supercoil] 0 0
33736 3 N GO:0097159 organic cyclic compound binding "Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure." [CHEBI:33832, GOC:sjw, PMID:7583672] 0 0
35405 3 N GO:1901363 heterocyclic compound binding "Interacting selectively and non-covalently with heterocyclic compound." [GOC:TermGenie] 0 0
39579 5 SOFA SO:0000001 region """A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids."" [SO:ke]" 0 0
39724 5 SOFA SO:0000147 exon """A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing."" [SO:ke]" 0 0
40233 5 SOFA SO:0000657 repeat_region """A region of sequence containing one or more repeat units."" [SO:ke]" 0 0
40249 5 SOFA SO:0000673 transcript """An RNA synthesized on a DNA or RNA template by an RNA polymerase."" [SO:ma]" 0 0
40280 5 SOFA SO:0000704 gene """A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions."" [SO:immuno_workshop]" 0 0
40582 5 NULL SO:0001009 DNA_constraint_sequence """A double-stranded DNA used to control macromolecular structure and function."" [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\]&dispmax=50]" 0 0
40633 5 NULL SO:0001060 sequence_variant """A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration."" [SO:ke]" 1 0
40981 5 SOFA SO:0001411 biological_region """A region defined by its disposition to be involved in a biological process."" [SO:cb]" 0 0
41106 5 NULL SO:0001537 structural_variant """A sequence variant that changes one or more sequence features."" [SO:ke]" 0 0
41493 5 SOFA SO:0005836 regulatory_region """A region of sequence that is involved in the control of a biological process."" [SO:ke]" 0 0
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment