Commit 54b9a87e authored by Susan Fairley's avatar Susan Fairley
Browse files

Add perl for otherfeatures and vega.

parent 721d924b
......@@ -139,7 +139,7 @@ foreach my $pattern (@ranges){
#we now need to run it for the otherfeatures|vega databases, but only the pepstats
my $vega_db = ".*_vega_$release\_.*";
$call = "bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '" . "$path/output_translation_vega.txt" . "' -q $queue -R$memory ./translation_attribs.pl --user $user --pass $pass $options";
$call = "bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '" . "$path/output_translation_vega.txt" . "' -q $queue -R$memory perl ./translation_attribs.pl --user $user --pass $pass $options";
$call .= " --pattern '" . $vega_db. "'";
system($call);
......@@ -150,7 +150,7 @@ system($call);
my $other_db = ".*_otherfeatures_$release\_.*";
foreach my $pattern (@ranges){
$call = "bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '" . "$path/output_translation_other_$pattern.txt" . "' -q $queue -R$memory ./translation_attribs.pl --user $user --pass $pass $options";
$call = "bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '" . "$path/output_translation_other_$pattern.txt" . "' -q $queue -R$memory perl ./translation_attribs.pl --user $user --pass $pass $options";
$call .= " --pattern '" . $pattern . $other_db. "'";
system($call);
......
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