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ensembl-gh-mirror
ensembl
Commits
54b9a87e
Commit
54b9a87e
authored
Apr 19, 2010
by
Susan Fairley
Browse files
Add perl for otherfeatures and vega.
parent
721d924b
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1
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misc-scripts/translation_attribs_wrapper.pl
misc-scripts/translation_attribs_wrapper.pl
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misc-scripts/translation_attribs_wrapper.pl
View file @
54b9a87e
...
...
@@ -139,7 +139,7 @@ foreach my $pattern (@ranges){
#we now need to run it for the otherfeatures|vega databases, but only the pepstats
my
$vega_db
=
"
.*_vega_
$release
\
_.*
";
$call
=
"
bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '
"
.
"
$path
/output_translation_vega.txt
"
.
"
' -q
$queue
-R
$memory
./translation_attribs.pl --user
$user
--pass
$pass
$options
";
$call
=
"
bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '
"
.
"
$path
/output_translation_vega.txt
"
.
"
' -q
$queue
-R
$memory
perl
./translation_attribs.pl --user
$user
--pass
$pass
$options
";
$call
.=
"
--pattern '
"
.
$vega_db
.
"
'
";
system
(
$call
);
...
...
@@ -150,7 +150,7 @@ system($call);
my
$other_db
=
"
.*_otherfeatures_
$release
\
_.*
";
foreach
my
$pattern
(
@ranges
){
$call
=
"
bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '
"
.
"
$path
/output_translation_other_
$pattern
.txt
"
.
"
' -q
$queue
-R
$memory
./translation_attribs.pl --user
$user
--pass
$pass
$options
";
$call
=
"
bsub -R 'select[(myens_staging1<=800)&&(myens_staging2<=800)]' -o '
"
.
"
$path
/output_translation_other_
$pattern
.txt
"
.
"
' -q
$queue
-R
$memory
perl
./translation_attribs.pl --user
$user
--pass
$pass
$options
";
$call
.=
"
--pattern '
"
.
$pattern
.
$other_db
.
"
'
";
system
(
$call
);
...
...
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