Commit 56f7fc51 authored by Kieron Taylor's avatar Kieron Taylor 😠
Browse files

Missing letter 'd' broke coding/merge/other sorting.

parent 323267ef
......@@ -66,7 +66,7 @@ sub new {
'verbose' => shift,
};
bless $self, $class;
if ($self->{'ccds_dba'} == undef) { warning ("Running without CCDS DB");}
if (not defined ($self->{'ccds_dba'}) ) { warning ("Running without CCDS DB");}
return $self;
}
......@@ -126,7 +126,7 @@ sub select_canonical_transcript_for_Gene {
# Constants for doing numerical sorting of transcripts based upon which ones we prefer. Lowest is best.
my %source_priority = ('ccds' => 1,
'merge' => 2,
'merged' => 2,
'other' => 3);
my %biotype_priority = ('protein_coding' => 1,
'nonsense_mediated_decay' => 2,
......
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