Commit 5cfc0a2c authored by Magali Ruffier's avatar Magali Ruffier
Browse files

source RefSeq_dna is not used any more

parent e54a0c39
......@@ -36,8 +36,6 @@ sub run {
$peptide_source_id =
$self->get_source_id_for_source_name('RefSeq_peptide');
$dna_source_id =
$self->get_source_id_for_source_name('RefSeq_dna');
$mrna_source_id =
$self->get_source_id_for_source_name('RefSeq_mRNA','refseq');
$ncrna_source_id =
......@@ -45,8 +43,6 @@ sub run {
$pred_peptide_source_id =
$self->get_source_id_for_source_name('RefSeq_peptide_predicted');
$pred_dna_source_id =
$self->get_source_id_for_source_name('RefSeq_dna_predicted');
$pred_mrna_source_id =
$self->get_source_id_for_source_name('RefSeq_mRNA_predicted','refseq');
$pred_ncrna_source_id =
......@@ -54,11 +50,9 @@ sub run {
if($verbose){
print "RefSeq_peptide source ID = $peptide_source_id\n";
print "RefSeq_dna source ID = $dna_source_id\n";
print "RefSeq_mRNA source ID = $mrna_source_id\n";
print "RefSeq_ncRNA source ID = $ncrna_source_id\n";
print "RefSeq_peptide_predicted source ID = $pred_peptide_source_id\n";
print "RefSeq_dna_predicted source ID = $pred_dna_source_id\n" ;
print "RefSeq_mRNA_predicted source ID = $pred_mrna_source_id\n" ;
print "RefSeq_ncRNA_predicted source ID = $pred_ncrna_source_id\n" ;
}
......@@ -148,10 +142,6 @@ sub create_xrefs {
$type = 'dna';
} elsif($file =~ /RefSeq_dna/){
$type = 'dna';
} elsif($file =~ /RefSeq_protein/){
$type = 'peptide';
......
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