Have replaced the deprecated "fetch_all_failed_jobs" by "fetch_all_by_analysis_id_status".

The new function takes an analysis_id and a job status as parameters.

modules/Bio/EnsEMBL/Pipeline/FASTA/EmailSummary.pm

@@ -124,7 +124,7 @@ sub jobs {
 
 sub failed {
   my ($self) = @_;
-  my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_failed_jobs();
+  my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_by_analysis_id_status(undef,'FAILED');
   if(! @{$failed}) {
     return 'No jobs failed. Congratulations!';
   }