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Commit 5e61b532 authored by Kevin Howe's avatar Kevin Howe
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Omit D_segment and J_segment genes from the dump, thus excluding them

from the sequence-match xref pipeline (they are too for this to be
sensible)
parent 10a7c942
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......@@ -595,6 +595,9 @@ sub fetch_and_dump_seq{
my $i =0;
my $rna = 0;
foreach my $gene (@genes){
next if $gene->biotype eq 'J_segment';
next if $gene->biotype eq 'D_segment';
foreach my $transcript (@{$gene->get_all_Transcripts()}) {
$i++;
my $seq = $transcript->spliced_seq();
......
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