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ensembl-gh-mirror
ensembl
Commits
65e73506
Commit
65e73506
authored
23 years ago
by
Philip Lijnzaad
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'all' prolly clearer than 'mega'
parent
8c297c7b
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misc-scripts/utilities/satellite_dbdump_bychr.pl
+3
-3
3 additions, 3 deletions
misc-scripts/utilities/satellite_dbdump_bychr.pl
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3 additions
and
3 deletions
misc-scripts/utilities/satellite_dbdump_bychr.pl
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3
−
3
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65e73506
...
...
@@ -35,7 +35,7 @@
naming scheme, as
satellite_dbdump_bychr -litedb <litedbinstance> \
-
mega
'homo_sapiens_\%s_110' [ -chr <a-chromosome> ]
-
all
'homo_sapiens_\%s_110' [ -chr <a-chromosome> ]
In this case, the %s will be replaced by all the known database
types, and all will be dumped. Is the theory.
...
...
@@ -102,7 +102,7 @@ my $mousedb;
# 'module:s' => \$module,
'
chr:s
'
=>
\
$chr
,
'
workdir:s
'
=>
\
$workdir
,
'
limit:n
'
=>
\
$lim
,
'
limit:n
'
=>
\
$lim
,
# no more than so many rows (debugging)
'
family:s
'
=>
\
$famdb
,
'
disease:s
'
=>
\
$diseasedb
,
'
maps:s
'
=>
\
$mapsdb
,
...
...
@@ -111,7 +111,7 @@ my $mousedb;
'
embl:s
'
=>
\
$embldb
,
'
est:s
'
=>
\
$estdb
,
'
mouse:s
'
=>
\
$mousedb
,
'
mega
:s
'
=>
\
$template
,
#dump all known ones, using $template
'
all
:s
'
=>
\
$template
,
#dump all known ones, using $template
);
die
"
need a litedb; use -litedb something
"
unless
$litedb
;
...
...
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