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Commit 6607f485 authored by Dan Staines's avatar Dan Staines
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patched to v70

parent 0e2e6383
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modules/t/test-genome-DBs/homo_sapiens/core/alt_allele.sql
View file @ 6607f485
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CREATE TABLE `alt_allele` (
`alt_allele_id` int(11) NOT NULL auto_increment,
`gene_id` int(11) NOT NULL default '0',
`is_ref` BOOLEAN NOT NULL DEFAULT '0',
`alt_allele_id` int(11) NOT NULL AUTO_INCREMENT,
`gene_id` int(11) NOT NULL DEFAULT '0',
`is_ref` tinyint(1) NOT NULL DEFAULT '0',
UNIQUE KEY `gene_idx` (`gene_id`),
UNIQUE KEY `allele_idx` (`alt_allele_id`,`gene_id`)
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modules/t/test-genome-DBs/homo_sapiens/core/analysis.sql
View file @ 6607f485
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modules/t/test-genome-DBs/homo_sapiens/core/analysis_description.sql
View file @ 6607f485
CREATE TABLE `analysis_description` (
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modules/t/test-genome-DBs/homo_sapiens/core/analysis_description.txt
View file @ 6607f485
1282 Genes were annotated by the Ensembl automatic analysis pipeline using either a GeneWise model from a human/vertebrate protein, a set of aligned human cDNAs followed by GenomeWise for ORF prediction or from Genscan exons supported by protein, cDNA and EST evidence. GeneWise models are further combined with available aligned cDNAs to annotate UTRs. ensembl transcript 1 web data 1
1503 new description new label 0 web data 2
1504 updated description \N 0 web data 3
1282 Genes were annotated by the Ensembl automatic analysis pipeline using either a GeneWise model from a human/vertebrate protein, a set of aligned human cDNAs followed by GenomeWise for ORF prediction or from Genscan exons supported by protein, cDNA and EST evidence. GeneWise models are further combined with available aligned cDNAs to annotate UTRs. ensembl transcript 1 web data 1 0 \N
1503 new description new label 0 0 \N
1504 updated description N 0 0 \N
modules/t/test-genome-DBs/homo_sapiens/core/assembly.sql
View file @ 6607f485
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modules/t/test-genome-DBs/homo_sapiens/core/assembly.txt
View file @ 6607f485
469271 965905 1 200 10 209 1
469271 965905 201 400 401 600 -1
469282 965905 1 100 701 800 -1
469283 317101 30263615 30426490 101 162976 1
469283 317332 30811187 30929959 101 118873 1
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......@@ -10,34 +13,31 @@
469283 368744 30249935 30263614 101 13780 1
469283 376992 31205533 31254640 101 49208 1
469283 469270 30929960 30993468 101 63609 1
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469343 469270 1 63609 1 63609 1
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469337 317332 1 118873 1 118873 1
469348 368744 657970 671649 101 13780 1
469338 368744 1 13780 1 13780 1
469339 318770 1 84710 1 84710 1
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469341 376992 1 49208 1 49208 1
469342 319047 1 145414 1 145414 1
469343 469270 1 63609 1 63609 1
469348 317101 671650 834525 101 162976 1
469348 339816 834526 859435 101 25010 1
469348 317332 1219222 1337994 101 118873 1
469348 317348 1494769 1613567 101 118899 1
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469348 345105 1116236 1134611 1 18376 1
469348 318770 1134612 1219221 101 84710 1
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modules/t/test-genome-DBs/homo_sapiens/core/assembly_exception.sql
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modules/t/test-genome-DBs/homo_sapiens/core/attrib_type.sql
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modules/t/test-genome-DBs/homo_sapiens/core/attrib_type.txt
View file @ 6607f485
......@@ -15,4 +15,4 @@
15 _rna_edit RNA editing \N
16 _selenocysteine Selenocysteine \N
17 codon_table Codon Table Alternate codon table
18 non_ref Non Reference Non Reference Sequence Region
\ No newline at end of file
18 non_ref Non Reference Non Reference Sequence Region
modules/t/test-genome-DBs/homo_sapiens/core/coord_system.sql
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modules/t/test-genome-DBs/homo_sapiens/core/data_file.sql
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `data_file` (
`data_file_id` int(11) unsigned NOT NULL AUTO_INCREMENT,
`coord_system_id` int(11) NOT NULL,
`analysis_id` int(11) NOT NULL,
`data_file_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
`coord_system_id` int(10) unsigned NOT NULL,
`analysis_id` smallint(5) unsigned NOT NULL,
`name` varchar(100) NOT NULL,
`version_lock` tinyint(1) NOT NULL DEFAULT '0',
`absolute` tinyint(1) NOT NULL DEFAULT '0',
......@@ -11,4 +33,15 @@ CREATE TABLE `data_file` (
UNIQUE KEY `df_unq_idx` (`coord_system_id`,`analysis_id`,`name`,`file_type`),
KEY `df_name_idx` (`name`),
KEY `df_analysis_idx` (`analysis_id`)
);
\ No newline at end of file
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/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;
-- Dump completed on 2012-11-05 10:52:10
modules/t/test-genome-DBs/homo_sapiens/core/density_feature.sql
View file @ 6607f485
-- MySQL dump 10.13 Distrib 5.1.61, for redhat-linux-gnu (x86_64)
--
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CREATE TABLE `density_feature` (
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`density_type_id` int(11) NOT NULL default '0',
`seq_region_id` int(11) NOT NULL default '0',
`seq_region_start` int(11) NOT NULL default '0',
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`density_value` float NOT NULL default '0',
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`density_value` float NOT NULL DEFAULT '0',
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KEY `seq_region_idx` (`density_type_id`,`seq_region_id`,`seq_region_start`),
KEY `seq_region_id_idx` (`seq_region_id`)
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-- Dump completed on 2012-11-05 10:52:10
modules/t/test-genome-DBs/homo_sapiens/core/density_type.sql
View file @ 6607f485
-- MySQL dump 10.13 Distrib 5.1.61, for redhat-linux-gnu (x86_64)
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-- Host: mysql-eg-devel-1.ebi.ac.uk Database: homo_sapiens_core_test_db
-- ------------------------------------------------------
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-- Table structure for table `density_type`
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CREATE TABLE `density_type` (
`density_type_id` int(11) NOT NULL auto_increment,