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Commit 663a2fe2 authored by Steve Trevanion's avatar Steve Trevanion
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added numerical prefixes (for sorting mapview statistics)

parent 6ebdb59a
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......@@ -222,49 +222,49 @@ foreach my $slice (@$top_slices){
## stats
my @attribs;
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Known genes',
(-NAME => '12:Known genes',
-CODE => 'KnownGeneCount',
-VALUE => $total{'Known'} || 0,
-DESCRIPTION => 'Total Number of Known genes');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Novel CDS',
(-NAME => '14:Novel CDS',
-CODE => 'NovelCDSCount',
-VALUE => $total{'Novel_CDS'} || 0,
-DESCRIPTION => 'Total Number of Novel CDSs');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Novel transcripts',
(-NAME => '16:Novel transcripts',
-CODE => 'NovelTransCount',
-VALUE => $total{'Novel_Transcript'} || 0,
-DESCRIPTION => 'Total Number of Novel transcripts');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Putative transcripts',
(-NAME => '24:Putative transcripts',
-CODE => 'PutTransCount',
-VALUE => $total{'Putative'} || 0,
-DESCRIPTION => 'Total Number of Putative transcripts');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Predicted transcripts',
(-NAME => '30:Predicted transcripts',
-CODE => 'PredTransCount',
-VALUE => $total{'Predicted_Gene'} || 0,
-DESCRIPTION => 'Total Number of Predicted transcripts');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Ig segments',
(-NAME => '26:Ig segments',
-CODE => 'IgSegCount',
-VALUE => $total{'Ig_Segment'} || 0,
-DESCRIPTION => 'Total Number of Ig Segments');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Ig pseudogene Segments',
(-NAME => '28:Ig pseudogene Segments',
-CODE => 'IgPsSegCount',
-VALUE => $total{'Ig_Pseudogene_Segment'} || 0,
-DESCRIPTION => 'Total Number of Ig Pseudogene Segments');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Total pseudogenes',
(-NAME => '18:Total pseudogenes',
-CODE => 'TotPsCount',
-VALUE => $total{'Pseudogene'}
+ $total{'Processed_pseudogene'}
......@@ -272,31 +272,31 @@ foreach my $slice (@$top_slices){
-DESCRIPTION => 'Total Number of Pseudogenes');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Unclassified pseudogenes',
(-NAME => '23:Unclassified pseudogenes',
-CODE => 'UnclassPsCount',
-VALUE => $total{'Pseudogene'} || 0,
-DESCRIPTION => 'Number of Unclassified pseudogenes');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Processed pseudogenes',
(-NAME => '20:Processed pseudogenes',
-CODE => 'ProcPsCount',
-VALUE => $total{'Processed_pseudogene'} || 0,
-DESCRIPTION => 'Number of Processed pseudogenes');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Unprocessed pseudogenes',
(-NAME => '22:Unprocessed pseudogenes',
-CODE => 'UnprocPsCount',
-VALUE => $total{'Unprocessed_pseudogene'} || 0,
-DESCRIPTION => 'Number of Unprocessed pseudogenes');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Known genes (in progress)',
(-NAME => '13:Known genes (in progress)',
-CODE => 'KnwnprogCount',
-VALUE => $total{'Known_in_progress'} || 0,
-DESCRIPTION => 'Number of Known Genes in progress');
push @attribs, Bio::EnsEMBL::Attribute->new
(-NAME => 'Novel CDS (in progress)',
(-NAME => '15:Novel CDS (in progress)',
-CODE => 'NovCDSprogCount',
-VALUE => $total{'Novel_CDS_in_progress'} || 0,
-DESCRIPTION => 'Number of novel CDS in progress');
......
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